Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,816,188 | G→A | 6.5% | G211G (GGC→GGT) | cpxR ← | two‑component system regulator CpxR |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,816,188 | 0 | G | A | 6.5% | 178.4 / 2.4 | 61 | G211G (GGC→GGT) | cpxR | two‑component system regulator CpxR |
Reads supporting (aligned to +/- strand): ref base G (29/28); new base A (2/2); total (31/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.93e-01 |
CCCGCCCCCACCAGGAAGGTCAGGGTATTGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTG > NC_002947/3816043‑3816329 | cccgcccccACCAGGAAGGTCAGGGTATTGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCAGCCATCGGCACGCGGGcc > 4:943/1‑148 (MQ=255) caGGAAGGTCAGGGTATTGGCAAGCCAGAAGGGCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCg < 6:239876/149‑1 (MQ=255) gTCAGGGTATTGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGAt > 7:214528/1‑145 (MQ=255) gTCAGGGTATTGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGAt < 8:214528/145‑1 (MQ=255) ggTATTGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGAc < 8:229882/149‑1 (MQ=255) tATTGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGACCAAGTTTTTGCCGGATGCTGCTGACGt > 5:86327/1‑149 (MQ=255) aTTGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTg > 7:176102/1‑149 (MQ=255) ttGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGc < 1:587/149‑1 (MQ=255) ggCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCa < 6:381130/148‑1 (MQ=255) ccAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGAt < 1:406424/149‑1 (MQ=255) ccAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGAt < 2:309218/149‑1 (MQ=255) aGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTc < 6:84442/149‑1 (MQ=255) ttCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGcc < 6:298930/94‑1 (MQ=255) ttCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGcc > 5:298930/1‑94 (MQ=255) ttCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGt > 3:183692/1‑148 (MQ=255) ccAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTc < 2:91382/147‑1 (MQ=255) cAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCACACGCTCTGGATACAGATGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGc > 7:191885/1‑149 (MQ=255) aGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGcg > 6:79170/1‑149 (MQ=255) gACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGAACCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATCCTGCTGACGTGCACGTCGAACCGACGGTCATAACGGGTAAGcggacggc > 7:252256/1‑149 (MQ=255) cGGCGCATAATTCGACGATCAGCATGTAGCCAATGCCGCGCACGCTCTGGATCCAGCTGCAGCCATCGGCACGCGGGCCAACTTTTTGCAGGATGCTGCTGACGTGCACGTCGATCCGTCCCTCATAACGGCTCAGCGGCCCGCCCAgg > 4:326080/1‑149 (MQ=255) cgcATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCa < 3:943/149‑1 (MQ=255) tcatcttTCGACGATCAGCATGTAGCCCATGCCGCGCAGGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCAGGTCGATGCGTCGGTCATAACGGGTCAGcg < 5:415111/133‑1 (MQ=255) gcATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTg < 3:96459/84‑1 (MQ=255) gcATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTg > 4:96459/1‑84 (MQ=255) gaatcatTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAACTTTTTGCCGGAAGCTCCTGACGTGCACGTCGATGCCTCGGTCATAACCGGTCAGcg > 6:415111/3‑134 (MQ=255) ttCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAgt > 3:206245/1‑147 (MQ=255) ttCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGc > 7:219738/1‑148 (MQ=255) gacgaTCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACgg > 8:335758/1‑118 (MQ=255) gacgaTCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACgg < 7:335758/118‑1 (MQ=255) gacgaTCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGa > 5:291833/1‑147 (MQ=255) gacgaTCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGAc < 4:183692/148‑1 (MQ=255) acgaTCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAg > 1:363305/1‑149 (MQ=255) cgaTCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGc > 5:21468/1‑143 (MQ=255) cgaTCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGc < 6:21468/143‑1 (MQ=255) aTCAGCATGTAGCCCATGCCGCGCACGCGCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTc < 8:176102/149‑1 (MQ=255) tGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCtgcttg > 1:358839/1‑149 (MQ=255) cATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCtgcttgct > 5:310051/1‑144 (MQ=255) cATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCtgcttgct < 6:310051/144‑1 (MQ=255) aTGCCGCGCACGCTCTGGATCCTTCTTCTGCCATCCGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCTGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAg < 8:252256/149‑1 (MQ=255) cgcgCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGACCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGa > 4:217284/1‑149 (MQ=255) ctctGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTg > 5:19238/1‑149 (MQ=255) gATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATTCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGgcgcg > 1:289519/1‑149 (MQ=255) aTCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAg < 6:250384/107‑1 (MQ=255) aTCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAg > 5:250384/1‑107 (MQ=255) cacctgctgCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAg > 3:314032/4‑149 (MQ=255) cAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCa < 8:219738/148‑1 (MQ=255) ctgctgCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGt < 1:193587/77‑1 (MQ=255) ctgctgCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGt > 2:193587/1‑77 (MQ=255) gctgcCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCtt > 3:203492/1‑149 (MQ=255) ctgcCATCGGCACGCGGGCCAAGTTTTTGCCGGCTGCTGCTGACGTGCACGGCGATGCGTCGGTCTTAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCGTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTc < 3:326080/149‑1 (MQ=255) ctgcCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAggccg < 7:82299/147‑4 (MQ=255) gcCATCGGCACGCGGACCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGa < 3:217284/149‑1 (MQ=255) ccATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCCGCGGACCGGCCGGGCGCGCCCGGAGTTCg > 2:394734/1‑147 (MQ=255) ccATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAg < 1:394734/140‑1 (MQ=255) cATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTCCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAg > 6:36040/1‑148 (MQ=255) tCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAg > 6:86361/1‑149 (MQ=255) ggCTCGCGGGACAAGTTGATGTCGGATGCTGCTTACGTGCACGTAGTTGCGTCGGTCATAACGTGTCCGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAgg < 8:87842/148‑1 (MQ=255) ggCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAgg < 8:191885/148‑1 (MQ=255) ggCACGCGGACCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCTATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGCTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGc < 6:86327/149‑1 (MQ=255) gCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCtgcttgct > 6:244735/1‑107 (MQ=255) cACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTg < 2:363305/149‑1 (MQ=255) | CCCGCCCCCACCAGGAAGGTCAGGGTATTGGCAAGCCAGAAGGCCAGGAACAGCTTCCAGAACAGACGCCGGCGCATCATTCGACGATCAGCATGTAGCCCATGCCGCGCACGCTCTGGATCCAGCTGCTGCCATCGGCACGCGGGCCAAGTTTTTGCCGGATGCTGCTGACGTGCACGTCGATGCGTCGGTCATAACGGGTCAGCGGCCGGCCCAGGGCATTGAGCGACAGGTCCTGCTTGCTGACCAGCTGACCGGCCTGGCGCGCCAGGGCTTCGAGCAGGCTG > NC_002947/3816043‑3816329 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |