Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,419,549	+C	intergenic (‑38/+98)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,419,548	1	.	C	100.0%	105.4 / NA	32	intergenic (‑37/+99)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (17/15);  total (17/15)

GCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCAT  >  NC_002947/1419404‑1419688                                                                                                                                                  |                                                                                                                                              gctggggATGCAGGGTTCGATGCGGAAGAGCTGGTGAGTGTTGTTTTAGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTTTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑‑c                                                                                                                                             <  3:237193/143‑1 (MQ=255) gCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑‑cctc                                                                                                                                          >  1:52977/1‑146 (MQ=255)   aGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑‑cctctt                                                                                                                                        >  6:256697/1‑144 (MQ=255)      ggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTcgc                                                                                                                                      <  7:228966/149‑1 (MQ=255)                   gATGGGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑‑cctc                                                                                                                                          <  7:167617/131‑4 (MQ=255)                   gATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCt                                                                                                                         <  8:225270/149‑1 (MQ=255)                   gATGAGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑‑cctc                                                                                                                                          >  8:167617/1‑128 (MQ=255)                         gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCcaca                                                                                                                   <  5:282627/149‑1 (MQ=255)                          aaCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGGCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                                                  <  6:242369/149‑1 (MQ=255)                                         ttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGc                                                                                                    <  5:256697/148‑1 (MQ=255)                                              ttCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCCCTACCACAGGTACTGTGGAGTGGGTGaag                                                                                              >  7:185284/1‑147 (MQ=255)                                                 gCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCt                                                                                           >  2:40534/1‑149 (MQ=255)                                                  ccTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtg                                                                                          >  2:217916/1‑149 (MQ=255)                                                         aGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGAc                                                                                   >  2:25340/1‑149 (MQ=255)                                                          gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGAcc                                                                                  >  3:72829/1‑149 (MQ=255)                                                            aGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCt                                                                                <  1:40534/149‑1 (MQ=255)                                                             gCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCCCGACCCCACGTACGGTGGCGTGGGTGAAGGCTGTTGTGAcccag                                                                               >  3:165310/1‑147 (MQ=255)                                                                ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                            <  8:197329/149‑1 (MQ=255)                                                                ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                            <  1:28991/149‑1 (MQ=255)                                                                  tCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGa                                                                          <  1:25340/149‑1 (MQ=255)                                                                       ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCggg                                                                     <  4:151667/149‑1 (MQ=255)                                                                        cGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                    <  1:217916/149‑1 (MQ=255)                                                                                                    ggTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTaa                                        >  4:112852/1‑149 (MQ=255)                                                                                                            ttgttttgttTCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCCCTCCCCCAGGTTATGTGCAGTGGGTGGCGGCTGGGGTGACCCAGTGGGAGCGGGCGGGCCCCCGAAGAGGCCTGCCCGGCGAATGCAAGgt                                >  8:166840/1‑149 (MQ=255)                                                                                                                  tgtttCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTg                                            <  5:375264/131‑1 (MQ=255)                                                                                                                  tgtttCCCTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTg                                            >  6:375264/1‑131 (MQ=255)                                                                                                                       cccTGGATTCTGGGTTGCCTGGGCTGGCTCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCACTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGc                                                    >  1:21414/1‑119 (MQ=25)                                                                                                                       cccTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTTTGGAGTTCGTGACGGCTGGGGTGGCCCTGTGGGATCGGGCGTGCCCGCGAAGAGGCCTGACCAGCTAATGGAATGGTTGAGGctctt                     >  7:151713/1‑148 (MQ=25)                                                                                                                       cccTGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTACCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCGGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTTTGAGGCTCtg                     >  4:306871/1‑149 (MQ=38)                                                                                                                          tGGATTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTgg                  >  7:256208/1‑149 (MQ=255)                                                                                                                             aTTCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCCCTCCCCCAGGTACAGTGCAGTGCGTGACGGCTGTGGTGACCCAGTGGGGGCGGGCGTGCCCGCGAAGAGGCCAGACCAGCTAATTCAAGGTGTGAGGGTCTGTGGGt                >  2:301487/1‑148 (MQ=37)                                                                                                                              ttCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgtg                   >  6:103563/1‑144 (MQ=255)                                                                                                                              ttCTGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCGGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgtg                   <  5:103563/144‑1 (MQ=255)                                                                                                                                 tGGGTTGCCTGGGCTGGC‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCGGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAg                                  >  1:79769/1‑126 (MQ=255)                                                                                                                                 ggggTTGCCTGGGGGGGC‑CTCTTGGCGGGCACGCCCGCTCCCACTGGTACTGTGCTGTGCGGTAGGGGTGTGGTGACCCTGTGGGAGCGGGGGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAg                                  <  2:79769/125‑1 (MQ=25)                                                                                                                                         cTGGGCTGGC‑CTCTTCGCGGGCACCCCCCCACCCACAGGTACTGTGCAGTGCGTGGCGGCTGTTGTGACCCAGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGACCGGCGAATGCAATGTGTGAGGCGAGGTGGGGTAATTCGACCGc    >  8:93536/1‑148 (MQ=21)                                                                                                                                          ggggCTGGC‑CTCTGCGCGGGCCCGCCCGCTCCCACTGGTCCTGGGCAGTGCGTGACGGCTGGGGTGACCGTGTGGGTGGGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCAt  <  4:72829/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              GCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCAT  >  NC_002947/1419404‑1419688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑