Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 1,499,498 | 1 bp→CG | intergenic (+75/‑89) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,499,497 | 1 | . | C | 93.9% | 87.9 / ‑4.1 | 35 | intergenic (+74/‑90) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base . (0/2); major base C (12/19); minor base A (2/0); total (14/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.72e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | NC_002947 | 1,499,498 | 0 | T | G | 100.0% | 99.9 / NA | 35 | intergenic (+75/‑89) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (14/21); total (14/21) |
AGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCAC‑GGCTTTGCCGGT‑GT‑T‑TCGGGCACG‑‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCAT > NC_002947/1499366‑1499640 || aGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCAcg‑‑cccgctc < 2:40030/149‑6 (MQ=25) ccGTGATGCGGCCATTCAGACCCTGAACCACGCCTTGGCACCACAGCAGGACTGAGGCTGCCAACCGGTGGGAGCGGGCGTCCCCGCTAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCGGGT‑GT‑TCGCGGCCACGC‑CC‑GCTCCca < 6:306501/149‑1 (MQ=18) cGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTACCAAACGGTGGGAGCGGGCGTGCCCGCGAAACACGCGCCCCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TAGCGGGCACGC‑CC‑GCTCCca > 2:20832/1‑148 (MQ=21) tGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGAc < 6:186338/148‑1 (MQ=21) cATTCAGAGCCTGAACTAAGCCTTGGCACCACTCCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGc < 8:205677/149‑1 (MQ=21) agagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAAAACGCGCCCCCGTGCATGGCACC‑CGCTTTGCCGGT‑GT‑TAGCGGGCACGC‑CC‑GCTCCCCCAGACTGATTGCCAta > 4:316877/1‑147 (MQ=21) gCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGc < 5:169620/149‑1 (MQ=21) acctaaGCCTTGGCACAACCGCAGCACTGTGGCTCCCAACGGGGGGGCGGGGGGGGCCCCGCTAACCAGGCGCCGCGGT‑CCTGGCCCCGGGCTTGGCGGGT‑GTGC‑GCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGc < 2:344247/144‑1 (MQ=255) aagcaaGCCTTGCCACCCCAGCCGGACTGCGGCTGCCAACCGGGGGGTCCGGGCGGGCCCGCTAAACTGGGCCCGGGGTGCATGGCACG‑GGTTTTGCCGGT‑GT‑TCGGGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGc < 2:144009/144‑1 (MQ=255) cGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGAtt > 5:70945/1‑132 (MQ=18) cGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGAtt < 6:70945/132‑1 (MQ=18) cacaGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACACGAGCCCCGGTGCATGGCACC‑GGGATTGGCCGT‑GT‑TCGCGGGCCCG‑‑CCAGCAGCCCCAGACAGCTTGCCATTAATCGGGCCGATCGCGACCTTGACg > 2:269692/1‑149 (MQ=12) gAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc < 4:276694/149‑1 (MQ=25) gCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 8:346796/149‑1 (MQ=25) gCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt > 7:37042/1‑149 (MQ=25) gTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc > 6:164727/1‑149 (MQ=25) gTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc > 6:335789/1‑149 (MQ=25) gCCCGCGAAACCGGCGCCGCGGTGCATGCCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 5:294165/149‑1 (MQ=37) gCCCGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 2:106586/149‑1 (MQ=37) cccGCGAAACAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 5:338274/148‑1 (MQ=37) aaCAGGCGCCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCGCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGc < 1:20832/149‑1 (MQ=37) cAGGCGCCGCGGTTCAGGGCAGC‑GGCTTTGCCGGTGGT‑C‑GCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTa < 7:246569/149‑1 (MQ=38) gcgcCGCGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc > 3:162670/1‑148 (MQ=37) gccgcGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg < 3:316877/149‑1 (MQ=37) ccgcGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa > 7:46428/1‑127 (MQ=25) ccgcGGTGCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 8:46428/127‑1 (MQ=25) gCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt < 4:283689/100‑1 (MQ=21) gCATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttgtt > 3:283689/1‑100 (MQ=21) cATGGCACC‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 5:24700/1‑148 (MQ=38) ggcacc‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTGTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaaa > 1:33375/6‑149 (MQ=38) gcacc‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTCTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAAc < 2:33375/144‑1 (MQ=38) acc‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCg > 2:200542/3‑84 (MQ=21) acc‑GGCTTTGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCg < 1:200542/82‑1 (MQ=21) tttGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAt < 5:97323/133‑1 (MQ=39) tttGCCGGT‑GT‑TCGCGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGAt > 6:97323/1‑133 (MQ=39) tgttcgcGGGCACGC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCAt < 3:83948/143‑1 (MQ=255) || AGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCAC‑GGCTTTGCCGGT‑GT‑T‑TCGGGCACG‑‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCAT > NC_002947/1499366‑1499640 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |