| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,079,511 | Δ1 bp | 11.8% | noncoding (19/77 nt) | PP_t54 ← | tRNA‑Arg |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,079,511 | 0 | C | . | 11.8% | 98.9 / 7.5 | 34 | noncoding (19/77 nt) | PP_t54 | tRNA‑Arg |
| Reads supporting (aligned to +/- strand): ref base C (16/14); new base . (2/2); total (18/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGC > NC_002947/5079373‑5079646 | gAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGc > 1:105018/1‑148 (MQ=255) tCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTAT‑CAGCTGAGCTAt > 3:102193/1‑147 (MQ=255) tCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTAT‑CAGCTGAGCTAt > 3:107161/1‑147 (MQ=255) tCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTAT‑CAGCTGAGCTAt < 4:107161/147‑1 (MQ=255) tCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTAT‑CAGCTGAGCTAt < 4:102193/147‑1 (MQ=255) cgcgATTGGCAGTTTTAAACCAGATTACCGCTGGTTTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt > 1:47110/1‑147 (MQ=255) acccAGATTACCGCTGG‑TTGACTGAAAGGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCTGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTACCCGAGTACTCTATCCAGCTGATCTATGAGTCCGCAATTGGCAGttt < 2:47110/147‑1 (MQ=255) ccGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAg < 5:66531/115‑1 (MQ=255) ccGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAg > 6:66531/1‑115 (MQ=255) ccGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt > 8:303398/1‑119 (MQ=255) ccGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAt < 7:303398/119‑1 (MQ=255) gg‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCAGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGc > 4:151305/1‑149 (MQ=255) cAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCtt > 5:130227/1‑149 (MQ=255) gAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGttgat > 7:155153/1‑131 (MQ=40) gAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGttgat < 8:155153/131‑1 (MQ=40) aaCCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGttgatt < 6:187654/131‑1 (MQ=40) aaCCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGttgatt > 5:187654/1‑131 (MQ=40) aaCCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGaa < 6:173527/134‑1 (MQ=255) aaCCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGaa > 5:173527/1‑134 (MQ=255) ttCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCtt > 4:287031/1‑136 (MQ=255) ttCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCtt < 3:287031/136‑1 (MQ=255) ttCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCa > 8:131670/1‑149 (MQ=255) cAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCa < 7:131670/147‑1 (MQ=255) gCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAg < 5:80088/134‑1 (MQ=255) gCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAg > 6:80088/1‑134 (MQ=255) aCTCAGCATGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGa < 1:251976/149‑1 (MQ=255) gATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTCAGCAgg < 6:130227/149‑1 (MQ=255) ttCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTcagca > 5:225053/1‑145 (MQ=255) ttCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTcagca < 6:225053/145‑1 (MQ=255) ggTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATTCCGCAGGttgatagta > 4:244564/1‑78 (MQ=14) ggTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCg < 3:151305/149‑1 (MQ=255) ccGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTCAGCAGGATTCGAACCAGCGACCGCTCGGTTCGTAGc > 4:160966/1‑149 (MQ=255) tctATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTCAGCAGGATTCGAACCTg < 4:239793/122‑1 (MQ=255) tctATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTCAGCAGGATTCGAACCTg > 3:239793/1‑122 (MQ=255) | GAGTCCGCGATTGGCAGTTTTAAACCAGATTACCGCTGG‑TTGACTGAAATGGCTTTGCAAGCAGAACCACTTCAAGAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTATGAGTCCGCAATTGGCAGTTTTAGACCAGATACCGCTGGTTGATTGAAGCAGCCTTGCAAACAAAGCCACTTCAAAAGTGGCGGACTCAGCAGGATTCGAACCTGCGACCGCTCGGTTCGTAGC > NC_002947/5079373‑5079646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |