Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,127,636 | Δ1 bp | 6.4% | coding (1189/2187 nt) | PP_4514 → | alpha/beta hydrolase superfamily esterase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,127,636 | 0 | T | . | 6.4% | 196.9 / 7.0 | 62 | coding (1189/2187 nt) | PP_4514 | alpha/beta hydrolase superfamily esterase |
Reads supporting (aligned to +/- strand): ref base T (26/32); new base . (2/2); total (28/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
ATGTGATCCGCTCGTATATCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTGGCGCCGAATGGC > NC_002947/5127493‑5127783 | atgTGATCCGCTCGTATATCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGt < 3:322828/148‑1 (MQ=255) tgATCCGCTCGTATATCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGAt < 1:329274/148‑1 (MQ=255) gATCCGCTCGTATATCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTgg < 5:38597/143‑1 (MQ=255) gATCCGCTCGTATATCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTgg > 6:38597/1‑143 (MQ=255) aTCCGCTCGTATATCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCa < 7:258146/148‑1 (MQ=255) cTCGTATATCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGccc < 1:208516/149‑1 (MQ=255) tCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGa < 2:86489/149‑1 (MQ=255) gCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGAcgc < 6:164606/149‑1 (MQ=255) gCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGAcgc > 2:200492/1‑149 (MQ=255) ccGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGcggcgg < 1:200492/149‑1 (MQ=255) aTCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCAc > 6:336527/1‑149 (MQ=255) aTCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCAc < 5:151052/149‑1 (MQ=255) cACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTAc < 3:17375/149‑1 (MQ=255) tGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGc > 5:310048/1‑149 (MQ=255) tGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGc > 4:109177/1‑149 (MQ=255) ccGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGa < 3:72353/149‑1 (MQ=255) gCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAAc < 5:336527/149‑1 (MQ=255) gCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGatgcaag > 1:95830/1‑143 (MQ=255) gCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGt > 2:334530/1‑149 (MQ=255) aGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTcc > 6:152541/1‑149 (MQ=255) cATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGCCCTGACCATGTCCGATGAcc > 7:28385/1‑149 (MQ=255) gggTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAAc < 7:125443/133‑1 (MQ=255) gggTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAAc > 8:125443/1‑133 (MQ=255) tACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGcgcg > 8:54892/1‑149 (MQ=255) tGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAgc < 3:109177/148‑1 (MQ=255) gCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAgcgc < 5:149563/148‑1 (MQ=255) cTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCAt > 8:306003/1‑148 (MQ=255) cTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCAt < 7:306003/148‑1 (MQ=255) gACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCaa < 2:78944/149‑1 (MQ=255) tactTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCt > 2:246601/1‑113 (MQ=255) ctTCGACAGGGTGCAGTACCGCGTGTTGCACAAGGTCAACGCCCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCGGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTgg < 8:186303/149‑1 (MQ=255) ctTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTg < 6:310048/148‑1 (MQ=255) ttCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTggg > 4:312471/1‑149 (MQ=255) tCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGgc > 5:120021/1‑149 (MQ=255) cGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTggg < 7:54892/147‑1 (MQ=255) gACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGgcgc < 3:312471/149‑1 (MQ=255) gACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGgcgc < 6:120021/149‑1 (MQ=255) aGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCgg > 6:237522/1‑149 (MQ=255) aGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCgg < 5:237522/149‑1 (MQ=255) ccGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTc > 8:227306/1‑148 (MQ=255) cgTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACg < 1:334530/149‑1 (MQ=255) tggtgCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGc < 5:23060/149‑1 (MQ=255) caAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCg > 5:177197/1‑132 (MQ=255) caAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCg < 6:177197/132‑1 (MQ=255) aaGGGCAACGACCACAGCTTGGTGATCAAGGCCCGCGGCCGACGCGGCGGCACCGTCTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAg < 4:27777/149‑1 (MQ=255) aaGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAg > 6:325363/1‑149 (MQ=255) aaGGGCAACGACCACACCTTGGTGATCAACGCACGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCaa > 3:27777/1‑146 (MQ=255) aaGGGCAACGACCACACC‑TGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGc > 5:13788/1‑149 (MQ=255) aaGGGCAACGACCACACC‑TGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGc > 5:8877/1‑149 (MQ=255) gggCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGcc > 6:273933/1‑149 (MQ=255) gggCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGcc > 1:293575/1‑149 (MQ=255) ggCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCt < 7:227306/149‑1 (MQ=255) gCAACGACCACACC‑TGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTg < 6:13788/149‑1 (MQ=255) gCAACGACCACACC‑TGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTg < 6:8877/149‑1 (MQ=255) cAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTg > 7:127166/1‑149 (MQ=255) cacaCCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTgg > 1:238649/1‑143 (MQ=255) cacaCCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTgg < 2:238649/143‑1 (MQ=255) acacCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAATCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTGGCGCCGaa > 2:283120/1‑149 (MQ=255) acCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTg > 5:226654/1‑139 (MQ=255) acCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTg < 6:226654/139‑1 (MQ=255) acCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTGGCGCCGAATg < 2:293575/149‑1 (MQ=255) cTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAATCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTGGCGCCGAATGGc < 1:283120/149‑1 (MQ=255) | ATGTGATCCGCTCGTATATCCGCCAGCCGATCGACGCACCGCTGGAACTGGACCGCCTGCAGACCGACATGGGTACGCTGTATGGCCTGGACTACTTCGACAGGGTGCAGTACCGCGTGGTGCACAAGGGCAACGACCACACCTTGGTGATCAACGCCCGCGGCCGACGCGGCGGCACCGACTACCTGCGCCTGGGCCTGAACCTGTCCGATGACCTGCGCGGCGACAGCGCATTCAACCTGGGCGCCAGCTACCGGGTCAACGGCATCAACAGCCTTGGCGCCGAATGGC > NC_002947/5127493‑5127783 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |