| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,360,293:1 | +G | 9.3% | coding (829/1161 nt) | PP_3835 ← | two‑component system sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,360,293 | 1 | . | G | 9.3% | 278.0 / 23.6 | 75 | coding (829/1161 nt) | PP_3835 | two‑component system sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base . (36/32); new base G (2/5); total (38/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 | |||||||||||
ATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAGGCCACGCGTAGCGTTAACCAG > NC_002947/4360148‑4360440 | aTGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACg < 3:93127/149‑1 (MQ=255)aTGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACg < 3:246321/149‑1 (MQ=255) gcgcGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACggg > 2:294676/1‑149 (MQ=255) cgcgGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGT‑GATGCCATCGACGGGc < 1:17893/149‑1 (MQ=255) cgcgGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GACAGGCTGATGCGGCCATGCCCGT‑GATGCCATCGACggg < 8:95728/148‑1 (MQ=255) cgGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCCGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGT‑GATGCCATCGACGGGCAt < 8:254052/149‑1 (MQ=255) aTCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGT‑GATGCCATCGACGGGCAtg > 2:320934/1‑142 (MQ=255) aTCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGT‑GATGCCATCGACGGGCAtg < 1:320934/143‑2 (MQ=255) tctGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAg > 8:122928/1‑149 (MQ=255) tctGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAg > 2:112403/1‑149 (MQ=255) tgtgGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGt > 4:171019/1‑149 (MQ=255) tgGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTg < 6:159238/149‑1 (MQ=255) gTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAg > 3:205182/1‑148 (MQ=255) gTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGc < 5:46244/149‑1 (MQ=255) cTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAACAGGAGGACCACATCGACA‑‑GTAAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCaa > 1:107605/1‑148 (MQ=255) cTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAacac > 2:94118/1‑148 (MQ=255) cgccgcTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCGCATCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACACCTTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACAcc < 1:275659/148‑1 (MQ=255) tCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTg > 4:325523/1‑149 (MQ=255) ttCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGcc > 6:30133/1‑149 (MQ=255) ccACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCg > 7:47091/1‑149 (MQ=255) aCCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGCCCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGT‑GATGCCATCGACGGGCAtggc > 6:186782/1‑109 (MQ=38) aCCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGT‑GATGCCATCGACGGGCAtggc < 5:186782/112‑4 (MQ=38) tCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAAATTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCAGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATc > 8:269671/1‑149 (MQ=255) cGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAac > 4:161665/1‑125 (MQ=255) cGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAac < 3:161665/125‑1 (MQ=255) gAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATc < 5:187878/147‑1 (MQ=255) aaGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCAc > 2:244368/1‑149 (MQ=255) aCGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGGGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGAt < 6:180898/149‑1 (MQ=255) gcccttcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCAc < 5:123021/135‑1 (MQ=255) gcccttcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCAc > 6:123021/1‑135 (MQ=255) gcccttcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACgg > 2:281810/1‑147 (MQ=255) cccttcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGc < 1:294676/147‑1 (MQ=255) cccttcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAg > 1:173089/1‑149 (MQ=255) cccttcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑CTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAg > 6:283707/1‑149 (MQ=255) ccttcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAgg > 2:99116/1‑149 (MQ=255) ttcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTc > 2:317370/1‑149 (MQ=255) tcagcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGATcc > 5:76700/1‑149 (MQ=255) agcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACCTCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCg < 4:205182/148‑1 (MQ=255) agcccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCgg < 5:283707/149‑1 (MQ=255) cccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGGTGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGtt < 3:268955/149‑1 (MQ=255) cccttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGtt < 2:115534/149‑1 (MQ=255) ttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATc > 6:191207/1‑103 (MQ=255) ttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATc < 5:191207/103‑1 (MQ=255) ttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCa > 1:114646/1‑137 (MQ=255) ttcaACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCa < 2:114646/137‑1 (MQ=255) caACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTgca < 3:325523/147‑1 (MQ=255) caACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTgca < 3:171019/147‑1 (MQ=255) cGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAacac < 1:317370/148‑1 (MQ=255) gCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATTTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCt < 1:94118/149‑1 (MQ=255) aacaac‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCaa < 7:269671/149‑1 (MQ=255) aacaac‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCaa < 5:30133/149‑1 (MQ=255) ac‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTc > 8:23077/1‑148 (MQ=255) c‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCaa > 5:207971/1‑149 (MQ=255) c‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCa > 1:187591/1‑148 (MQ=255) gACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAacaaca < 1:162092/65‑1 (MQ=255) gACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAacaaca > 2:162092/1‑65 (MQ=255) cacaTCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGc > 2:238042/1‑149 (MQ=255) acaTCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTc > 2:216261/1‑116 (MQ=255) acaTCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTc < 1:216261/116‑1 (MQ=255) acaTCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCt < 2:173089/149‑1 (MQ=255) acaTCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCt > 3:338075/1‑149 (MQ=255) aTCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTg < 8:47091/149‑1 (MQ=255) tCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAAGAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTgg < 1:281810/149‑1 (MQ=255) gTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGc < 2:187591/149‑1 (MQ=255) ggCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCaa < 5:354060/58‑1 (MQ=255) ggCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCaa > 6:354060/1‑58 (MQ=255) tGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTc > 3:88878/1‑148 (MQ=255) aTGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCaa < 2:107605/148‑1 (MQ=255) ggCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGATCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAgg < 6:76700/149‑1 (MQ=255) cATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAGGCCa > 1:325066/1‑149 (MQ=255) aTGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAGGCCAc > 3:9365/1‑149 (MQ=255) gCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAGGCCAcgc > 8:17789/1‑149 (MQ=255) tGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAGGCCACGCGTACCGtt > 3:111797/1‑148 (MQ=255) ggCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAGGCCACGCGTAGCGTTaa > 5:74782/1‑149 (MQ=255) tC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAGGCCACGCGTAGCGTTAACCAg < 1:244368/149‑1 (MQ=255) | ATGCGCGGCAGTATCTCTGTGGGTATGCCTTCGCCGCTGTCTTCCACCTCGAAGCGCACGAAGCTGCCCTTCAGCCCTTCAACTTCGCCGAACAAC‑‑‑TCGACCACATCGACA‑‑GTCAGGCTGATGCGGCCATGCCCGTCGATGGCATC‑ACGGGCATTGAACAACAGGTTGAGCAACACCATCTGCAGTTGCCCGGCATCCACCTCGATCAACGGCAGGTCCGGTTGCAGCAACACCTTCAAGTCAATCGAGCTTGGCAATGCATGTTCAAGCAGGCCACGCGTAGCGTTAACCAG > NC_002947/4360148‑4360440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |