Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,687,696:1 +A 8.8% coding (672/1074 nt) PP_4148 → ABC transporter permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,687,6961.A 8.8% 214.3 / 16.3 57coding (672/1074 nt)PP_4148ABC transporter permease
Reads supporting (aligned to +/- strand):  ref base . (27/25);  new base A (2/3);  total (29/28)
Fisher's exact test for biased strand distribution p-value = 6.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.96e-01

GCCATCCTGCTGATCGTGCTGTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACGGGTGCTGTACGGCCACGTGTTCCGCAACGCC  >  NC_002947/4687553‑4687843
                                                                                                                                                |                                                                                                                                                   
gCCATCCTGCTGATCGTGCTGTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCt                                                                                                                                                >  3:37039/1‑149 (MQ=255)
 ccATCCTGCTGATCGTGCTGTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTg                                                                                                                                               >  1:129543/1‑149 (MQ=255)
         ctgATCGTGCTGTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCg                                                                                                                                        <  4:37039/148‑1 (MQ=255)
         ctgATCGTGCTGTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCg                                                                                                                                        <  1:245948/148‑1 (MQ=255)
            aTCGTGCTGTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATGACCAGCGCGGTGATCGGCag                                                                                                                                    <  4:303593/149‑2 (MQ=39)
            aTCGTGCTGTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATGACCAGCGCGGTGATCGGCag                                                                                                                                    <  3:68139/149‑2 (MQ=39)
                    gTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTg                                                                                                                                               <  8:262/130‑1 (MQ=255)
                    gTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTg                                                                                                                                               >  7:262/1‑130 (MQ=255)
                    gTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGcca                                                                                                                            >  5:55140/1‑149 (MQ=255)
                        gCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGccacca                                                                                                                         <  3:217743/148‑1 (MQ=255)
                            gTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGAcc                                                                                                                    <  6:55140/149‑1 (MQ=255)
                                      cTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGAcc                                                                                                           >  4:241096/1‑148 (MQ=255)
                                      cTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGAc                                                                                                            <  6:150875/147‑1 (MQ=255)
                                      cTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCa                                                                                                          <  3:314986/149‑1 (MQ=255)
                                       ttCGAATGGTTCCAGCTGCGTGGCCTCACCTCCAACAAATTCGACGAACTGAGCACCACCGGCAAGTTGCTGGACTACTTATGGAACCTGGTGCTGCCGATCACCGCGCTGGTCATCGACAACTTCGCACACATGACCATGCTCACCaa                                                                                                         >  8:250754/1‑149 (MQ=255)
                                        tCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGAcc                                                                                                           >  3:157445/1‑146 (MQ=255)
                                          gACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGa                                                                                                       <  4:157445/148‑1 (MQ=255)
                                           aCTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAAc                                                                                                     <  2:91156/149‑1 (MQ=255)
                                             aggTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGCTGCTGCCGATCAcc                                                                                                                                                      >  4:275106/2‑99 (MQ=255)
                                               gTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACATCGCCACCAGGACCCTGCTGCCCAAGAACAGCt                                                                                                 >  8:90196/1‑149 (MQ=255)
                                                    cGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTc                                                                                            >  4:277871/1‑149 (MQ=255)
                                                               cTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATcaa                                                                                 <  2:129543/149‑1 (MQ=255)
                                                                tCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATcaa                                                                                 >  8:188499/1‑148 (MQ=255)
                                                                  aCCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATcaaca                                                                               >  4:13716/1‑148 (MQ=255)
                                                                   ccTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCaacaaa                                                                             <  7:188499/149‑1 (MQ=255)
                                                                    cTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCaacaaac                                                                            <  3:277871/149‑1 (MQ=255)
                                                                     tCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACa                                                                                                    >  8:268011/1‑124 (MQ=255)
                                                                     tCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACa                                                                                                    <  7:268011/124‑1 (MQ=255)
                                                                             cTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTgg                                                                   >  4:118690/1‑149 (MQ=255)
                                                                                 gacgaACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCg                                                                                                                                        <  2:115388/76‑1 (MQ=255)
                                                                                 gacgaACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCg                                                                                                                                        >  1:115388/1‑76 (MQ=255)
                                                                                    gaACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGt                                                                     <  5:178716/140‑1 (MQ=255)
                                                                                    gaACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGt                                                                     >  6:178716/1‑140 (MQ=255)
                                                                                     aaCTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCgc                                                            >  4:142214/1‑148 (MQ=255)
                                                                                       cTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCt                                                                                                 <  8:208388/109‑1 (MQ=255)
                                                                                       cTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCt                                                                                                 >  7:208388/1‑109 (MQ=255)
                                                                                       cTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCgccaa                                                         <  3:13716/149‑1 (MQ=255)
                                                                                          aGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCgccaaggc                                                      >  6:48409/1‑149 (MQ=255)
                                                                                              ccaccGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCgccaaggccaag                                                  >  1:312377/1‑149 (MQ=255)
                                                                                                   ggCAAGGTGCTGGACTACTTCTGGGACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCt                                             <  5:195438/149‑1 (MQ=255)
                                                                                                            cTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGAt                                     >  7:534/1‑148 (MQ=255)
                                                                                                             tGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCa                                   >  3:245126/1‑149 (MQ=255)
                                                                                                              ggACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGc                                         <  7:137259/142‑1 (MQ=255)
                                                                                                              ggACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGc                                         >  8:137259/1‑142 (MQ=255)
                                                                                                               gACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCAc                                  <  4:245126/148‑1 (MQ=255)
                                                                                                                actactTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACgg                                <  3:241096/149‑1 (MQ=255)
                                                                                                                       cTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACg                                 >  3:298031/1‑141 (MQ=255)
                                                                                                                       cTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACg                                 <  4:298031/141‑1 (MQ=255)
                                                                                                                        tGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCa                                                                                                          <  3:153424/67‑1 (MQ=255)
                                                                                                                        tGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCa                                                                                                          >  4:153424/1‑67 (MQ=255)
                                                                                                                             ccTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACGGGTGCTGTACGGcc                   <  5:48409/149‑1 (MQ=255)
                                                                                                                                gaagttgcCGATGACCAGCGCGGTGATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCgccaaggccaag                                                  >  6:179630/6‑115 (MQ=38)
                                                                                                                                gaagttgcCGATGACCAGCGCGGTGATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCgccaaggccaag                                                  <  5:179630/110‑1 (MQ=38)
                                                                                                                                gaagttgcCGATGACCAGCGCGGTGATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACGGGTGCTGTACGGCCACg                >  8:293811/6‑149 (MQ=255)
                                                                                                                                 gTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACGGGTGCTGTACGGCCACgt               >  1:136951/1‑149 (MQ=255)
                                                                                                                                   gctgcCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACGGGTGCTGTACGGCCACgtgt             >  7:19599/1‑149 (MQ=255)
                                                                                                                                       ccGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCa                                                                                                          >  7:277266/1‑52 (MQ=255)
                                                                                                                                       ccGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCa                                                                                                          <  8:277266/52‑1 (MQ=255)
                                                                                                                                              ccGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACGGGTGCTGTACGGCCACGTGTTCCGCAACGcc  <  7:90196/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
GCCATCCTGCTGATCGTGCTGTTCGCCGGTGGCAGCTACTTCGACTGGTTCCCGCTGCGTGGCCTCACCTCCAACAACTTCGACGAACTGAGCACCACCGGCAAGGTGCTGGACTACTTCTGGCACCTGGTGCTGCCGATCACCGCGCTGGTCATCGGCAACTTCGCCACCATGACCCTGCTGACCAAGAACAGCTTCCTCGACGAAATCAACAAACAGTACGTGGTCACCGCCAAGGCCAAGGGCCTGAGCCGATCACGGGTGCTGTACGGCCACGTGTTCCGCAACGCC  >  NC_002947/4687553‑4687843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: