Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,010,938:1 | +A | 6.9% | coding (125/744 nt) | PP_0871 ← | glycine betaine/carnitine/choline ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,010,938 | 1 | . | A | 6.9% | 227.1 / 10.2 | 58 | coding (125/744 nt) | PP_0871 | glycine betaine/carnitine/choline ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base . (23/31); new base A (2/2); total (25/33) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
CTGCATGAAGCGCTCGGCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTGGTTGCCGGC > NC_002947/1010790‑1011079 | cTGCATGAAGCGCTCGGCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAAcgcg < 6:34105/149‑1 (MQ=255) aTGAAGCGGTCGGATTTTTCTACCCGGTGCGTCCTACTTAACGAAATGCCGGCGGGTATGCCAACGGCAAGCGCCGCCGCCATCTAAGTCCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCG‑CGCGTTATcgcgacga < 1:99103/149‑5 (MQ=255) gAAGCGCTCGGCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCg > 1:187906/1‑149 (MQ=255) aaGCGCTCGGCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCG‑CGCGTTATCGCGACGATctt < 2:69247/149‑3 (MQ=255) aGCGCTCGGCTTTGTCGACCCGGCGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCgtg > 5:228521/1‑149 (MQ=255) gcgcTCGGCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCgtgt < 6:63230/149‑1 (MQ=255) gcgcTCGGCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCgtgt > 5:336287/1‑149 (MQ=255) gcgcTCGGCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCgtgt < 7:30448/149‑1 (MQ=255) ggCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGGAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGAt < 2:39202/147‑1 (MQ=255) cTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCg < 7:28943/149‑1 (MQ=255) cTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCg < 5:343944/149‑1 (MQ=255) tGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATc > 3:281436/1‑149 (MQ=255) gTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACTGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGTTCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATc < 1:203709/148‑1 (MQ=255) cGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCG‑CGCGTTATCGCGACGATCttg > 2:75361/1‑134 (MQ=255) cGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCG‑CGCGTTATCGCGACGATCttg < 1:75361/134‑1 (MQ=255) aCCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTg < 1:118393/149‑1 (MQ=255) gTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGAc > 1:178045/1‑147 (MQ=255) ggTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACcagcag < 2:187906/149‑1 (MQ=255) ggTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACcagcag < 6:336287/149‑1 (MQ=255) gACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGc < 6:191276/148‑1 (MQ=255) cTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAg < 4:281436/149‑1 (MQ=255) aaCGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAgg < 1:300216/147‑1 (MQ=255) aCGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGAt < 1:21547/148‑1 (MQ=255) aCGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGAt < 2:103406/148‑1 (MQ=255) tGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGc < 6:228521/149‑1 (MQ=255) ccACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCgt < 3:322621/91‑1 (MQ=255) ccACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCgt > 4:322621/1‑91 (MQ=255) ccACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATccc > 6:184047/1‑149 (MQ=255) ccACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATcc > 1:77276/1‑148 (MQ=255) cACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATccc > 7:64887/1‑148 (MQ=255) cAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGcc > 1:151757/1‑149 (MQ=255) ccgccATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCg < 5:215074/149‑1 (MQ=255) cgccATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCGCTTCCGAACAGCCCCTTTCCg > 8:70971/1‑148 (MQ=255) aaG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTa < 2:155692/149‑1 (MQ=255) g‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGc < 5:184047/149‑1 (MQ=255) cAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCca < 8:64887/149‑1 (MQ=255) cAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTg > 4:308015/1‑149 (MQ=255) cAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTg < 2:151757/149‑1 (MQ=255) cAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTg > 4:271262/1‑149 (MQ=255) cAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTcc > 3:286201/1‑149 (MQ=255) ggTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCtt < 2:178045/149‑1 (MQ=255) tccgcTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGGGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTtgt < 7:70971/147‑1 (MQ=255) tGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTtgt < 2:77276/149‑1 (MQ=255) aGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGc > 2:125512/1‑149 (MQ=255) aGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTg < 6:240600/126‑1 (MQ=255) aGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTg > 5:240600/1‑126 (MQ=255) aGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGa < 6:176009/128‑1 (MQ=255) aGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGa > 5:176009/1‑128 (MQ=255) ccAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACAct > 8:69675/1‑149 (MQ=255) ccAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACAct > 4:129130/1‑149 (MQ=255) aaGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACActtc > 5:312859/1‑149 (MQ=255) gATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACActtctt < 4:286201/149‑1 (MQ=255) aTCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTg < 5:70405/149‑1 (MQ=255) aTCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTg > 6:157958/1‑149 (MQ=255) aTCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTg < 3:271262/149‑1 (MQ=255) aTCGTCACGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTg > 5:252869/1‑149 (MQ=255) cgcgcgTTATCGCGACGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTGGt > 3:210059/3‑149 (MQ=255) cgcgATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTGGTTGc > 8:251149/1‑149 (MQ=255) cgATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTGGTTGCCg < 1:125512/149‑1 (MQ=255) aTAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTGGTTGCCGGc < 5:157958/149‑1 (MQ=255) | CTGCATGAAGCGCTCGGCTTTGTCGACCCGGTGCGGTCGACTTAACGCAATGCCGGCGGGGATGCCCACGGCCAGCGCCGCCGCCATCGAAG‑CCAGCACCAATACCAGGTGCGCTTGCAGGTAGAACCCAAGATCGTCGCGATAACGCG‑CGATCGTGTCGATGCCGATCCAGTGGACCAGCAGGGCCAGGATGACGAGCACGGCGGCCCATCCCAACAGCCCCTTTCCGTAGCGTTTAGCCACAGGTGGACTCCTTGTGTAGTCGGCGAGCACACTTCTTGGTTGCCGGC > NC_002947/1010790‑1011079 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |