New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5491	55 (1.020)	4 (0.080)	3/246	NT	6.8%	coding (892/1371 nt)	trmE	GTPase
	?	NC_002947	= 5517	57 (1.110)					coding (866/1371 nt)	trmE	GTPase

TTCCAGCGCTACCCGCTCACCACTCAGGTCGGCCTTGTTGCGAATCAGCGTGACCTTGGC‑‑CGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5342‑5491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacgcgCCCTGAAGGCCATTGGCGAGGCAGACCGCGTTCTGCTGGTAGTCGACTCTACTGCGCCCGAGGCCAGCGACCCGTTCGCTTTGTGGCCTGAGTTTCTGGCTCAGCGGCCTGACCCGGCCAAGGTCACGCTGATTCGCAACAAGG  <  NC_002947/5517‑5374                                                                                                                                                                                                                                                                                                          TTCCAGCGCTACCCGCTCACCACTCAGGTCGGCCTTGTTGCGAATCAGCGTGACCTTGGCTACGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAAC                                                                                                                                                     >  1:98706/1‑149     AGCGCTACCCGCTCACCACTCAGGTCGGCCTTGTTGCGAATCAGCGTGACCTTGGC‑‑CGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAACGCGCCC                                                                                                                                               >  6:25627/1‑149     AGCGCTACCCGCTCACCACTCAGGTCGGCCTTGTTGCGAATCAGCGTGACCTTGGC‑‑CGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAACGCGCCC                                                                                                                                               >  6:30571/1‑149                                     GTTGCGAATCAGCGTGACCTTGGC‑‑CGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAACGCGCCCTGAAGGCCATTGGCGAGGCAGACCGCGTTCT                                                                                                                <  5:25627/148‑1                                     GTTGCGAATCAGCGTGACCTTGGC‑‑CGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAACGCGCCCTGAAGGCCATTGGCGAGGCAGACCGCGTTCT                                                                                                                <  5:30571/148‑1                                                GCGTGACCTTGGC‑‑CGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAACGCGCCCTGAAGGCCATTGGCGAGGCAGACCGCGTTCTG                                                                                                               <  5:34936/138‑1                                                GCGTGACCTTGGC‑‑CGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAACGCGCCCTGAAGGCCATTGGCGAGGCAGACCGCGTTCTG                                                                                                               >  6:34936/1‑138                                                                                                                                                    ACGCGCCCTGAAGGCCATTGGCGAGGCAGACCGCGTTCTGCTGGTAGTCGACTCTACTGCGCCCGAGGCCAGCGACCCGTTCGCTTTGTGGCCTGAGTTTCTGGCTCAGCGGCCTGACCCGGCCAAGGTCACGCTGATTCGCAACAAGG  <  8:265516/149‑1                                                                                                                                                                                                                                                                                                          TTCCAGCGCTACCCGCTCACCACTCAGGTCGGCCTTGTTGCGAATCAGCGTGACCTTGGC‑‑CGGGTCAGGCCGCTGAGCCAGAAACTCAGGCCACAAAGCGAACGGGTCGCTGGCCTCGGGCGCAGTAGAGTCGACTACCAGCAGAACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5342‑5491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaacgcgCCCTGAAGGCCATTGGCGAGGCAGACCGCGTTCTGCTGGTAGTCGACTCTACTGCGCCCGAGGCCAGCGACCCGTTCGCTTTGTGGCCTGAGTTTCTGGCTCAGCGGCCTGACCCGGCCAAGGTCACGCTGATTCGCAACAAGG  <  NC_002947/5517‑5374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.