New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	488226 =	58 (1.070)	4 (0.080)	4/244	NT	6.8%	coding (76/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
	?	NC_002947	488273 =	55 (1.080)					coding (29/990 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase

TGCAAACCTGGCTGCGCCAGATCCGCGACGAAGCCTACGTTGAAATCAAGCTGCCTGGCGCTGACCAGGCCGCCCAGTGAAGCCCCTGCGCTTCGCCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/488377‑488226 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgccgGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCCTG  >  NC_002947/488273‑488420                                                                                                                                                                                                                                                                                                              TGCAAACCTGGCTGCGCCAGATCCGCGACGAAGCCTACGTTGAAATCAAGCTGCCTGGCGCTGACCAGGCCGCCCAGTGAAGCCCCTGCGCTTCGCCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCG                                                                                                                                                         >  1:197628/1‑149                                                                                                CCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGC                                                          >  2:235155/1‑149                                                                                                       CCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCATTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGG                                                   >  8:323601/1‑149                                                                                                             CGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTG                                               >  3:310501/1‑147                                                                                                                     CCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCG                                     <  4:310501/149‑1                                                                                                                                                  CTCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCATTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAG        <  7:323601/149‑1                                                                                                                                                   TCGCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGG       <  2:262341/149‑1                                                                                                                                                     GCCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGC     <  4:233003/149‑1                                                                                                                                                      CCGGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCC    >  5:24838/1‑149                                                                                                                                                        GGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCCTG  <  4:109288/149‑1                                                                                                                                                                                                                                                                                                              TGCAAACCTGGCTGCGCCAGATCCGCGACGAAGCCTACGTTGAAATCAAGCTGCCTGGCGCTGACCAGGCCGCCCAGTGAAGCCCCTGCGCTTCGCCGTCACCCCCGGCGAGCCGGCCGGCATAGGCCCCGACCTGTGCCTGCTGCTCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/488377‑488226 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgccgGGGGTGACGGCGAAGCGCAGGGGCTTCACTGGGCGGCCTGGTCAGCGCCAGGCAGCTTGATTTCAACGTAGGCTTCGTCGCGGATCTGGCGCAGCCAGGTTTGCAGCTCTTCGTCATACTTGCGGTTGCGCAGTACGCTCAGGGCCTG  >  NC_002947/488273‑488420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.