New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	538932 =	50 (0.920)	4 (0.080)	4/244	NT	7.6%	coding (1310/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta
	?	NC_002947	538978 =	51 (1.010)					coding (1356/4074 nt)	rpoB	DNA‑directed RNA polymerase subunit beta

TCCGCCATCGACAGGCGTTCCTTGACCGCGCGCTCGACACGCACCAGGCCAACGCGGAACTGGTTCTCGGCCATCTCGCCGACGCACCGTACGCGACGGTTACCCAGGTGGTCGATGTCGTCGACGATGCCTTTGCCGTTACGGATATCGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/539085‑538932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgaccaCCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGGCGGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAACGCCAA  >  NC_002947/538978‑539124                                                                                                                                                                                                                                                                                                                TCCGCCATCGACAGGCGTTCCTTGACCGCGCGCTCGACACGCACCAGGCCAACGCGGAACTGGTTCTCGGCCATCTCGCCGACGCACCGTACGCGACGGTTACCCAGGTGGTCGATGTCGTCGACGATGCCTTTGCCGTTACGGATA                                                                                                                                                             <  3:232059/147‑1     CCATCGACAGGCGTTCCTTGACCGCGCGCTCGACACGCACCAGGCCAACGCGGAACTGGTTCTCGGCCATCTCGCCGACGCACCGTACGCGACGGTTACCCAGGTGGTCGATGTCGTCGACGATGCCTTTGCCGTTACGGATATCGAC                                                                                                                                                        >  3:110167/1‑148                                 CTCGACACGCACCAGGCCAACGCGGAACTGGTTCTCGGCCATCTCGCCGACGCACCGTACGCGACGGTTACCCAGGTGGTCGATGTCGTCGACGATGCCTTTGCCGTTACGGATATCG                                                                                                                                                          <  7:249813/118‑1                                 CTCGACACGCACCAGGCCAACGCGGAACTGGTTCTCGGCCATCTCGCCGACGCACCGTACGCGACGGTTACCCAGGTGGTCGATGTCGTCGACGATGCCTTTGCCGTTACGGATATCG                                                                                                                                                          >  8:249813/1‑118                                                                                         GTACGCGACGGTTACCCAGGTGGTCGATGTCGTCGACGATGCCTTTGCCGTTACGGATATCGACCACCTGGGTAACCGTCGCGGACGGTGCGTCGGC‑GAGCTGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGG                                                                  >  3:15695/1‑149                                                                                                            GTGGTCGATGTCGTCGACGATGCCTTTGCCGTTACGGATATCGACCACCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGAT                                               >  4:296003/1‑149                                                                                                              GGTAGATGTCGTCGACGATGCCTTTGCCGTTACGGATATCGACCACCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGATCCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGG                                             >  7:152937/1‑149                                                                                                                      TCGTCGACGATGCCTTTGCCGTTACGGATATCGACCACCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGGCGGAAAGC                                     <  3:296003/149‑1                                                                                                                                               tgtcgTCGACCACCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGGCGGAAAGTGAAGGCCTGATGCCGCAAGACCTGA            <  5:171420/144‑1                                                                                                                                                gagATCGTCCACCTGGGTAACCGTGGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTGCGGGTTGGGCTGGTGCGTGTCGAGCTCGCGGTCAAGGAACGCCTGTCGATGGAGGAACGCGAAGGCCTGATGCCGGAAGACCTGAT           <  4:15695/146‑1                                                                                                                                                   ATCGACCACCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGGCGGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAc        >  7:5115/1‑148                                                                                                                                                    TCGACCACCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGGCGGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAAC       <  1:28696/149‑1                                                                                                                                                        CCACCTGGGTAACCGTCGCGTACGGTGCGTCGGCAGAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGGCGGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAACGC     >  1:47305/1‑148                                                                                                                                                         CACCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGGCGGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAACGCCAA  <  2:315545/149‑1                                                                                                                                                                                                                                                                                                                TCCGCCATCGACAGGCGTTCCTTGACCGCGCGCTCGACACGCACCAGGCCAACGCGGAACTGGTTCTCGGCCATCTCGCCGACGCACCGTACGCGACGGTTACCCAGGTGGTCGATGTCGTCGACGATGCCTTTGCCGTTACGGATATCGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/539085‑538932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgaccaCCTGGGTAACCGTCGCGTACGGTGCGTCGGC‑GAGATGGCCGAGAACCAGTTCCGCGTTGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCGATGGCGGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAACGCCAA  >  NC_002947/538978‑539124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.