New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 741869	NA (NA)	6 (0.120)	4/248	NT	NA	intergenic (+469/‑31)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	= 741902	NA (NA)					coding (3/1422 nt)	PP_0635	group II intron‑encoding maturase

GCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/741717‑741869 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT  <  NC_002947/741902‑741755                                                                                                                                                                                                                                                                                                                GCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTG                                                                                                                                                           >  7:48703/1‑149  CACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGG                                                                                                                                                          <  5:215488/149‑1   ACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGC                                                                                                                                                         >  7:202858/1‑149    CGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCG                                                                                                                                                        >  6:177674/1‑149     GGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG                                                                                                                                                       <  1:153044/149‑1     GGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG                                                                                                                                                       <  4:144404/149‑1     GGAACGCTGTGACGTAGAGCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG                                                                                                                                                       <  2:94723/149‑1                           ACAGGCATAAGTAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGT                                                                                                                                 >  5:249821/1‑149                                             GTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCAC                                                                                                              <  1:40284/149‑1                                              TCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACT                                                                                                             <  6:249821/149‑1                                                GCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTA                                                                                                           <  5:15212/149‑1                                                           CCTGGGAGATCTGTACGCTTGCCACTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCA                                                                                                               >  6:95683/1‑134                                                           CCTGGGAGATCTGTACGCTTGCCACTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCA                                                                                                               <  5:95683/134‑1                                                                                                                                                    TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCGTCCCGTCGCCTTTCGACGCGCGGTAGCACA                                               <  2:142610/109‑1                                                                                                                                                    TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCGTCCCGTCGCCTTTCGACGCGCGGTAGCACA                                               >  1:142610/1‑109                                                                                                                                                    TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCGTCCCGTCGCCTTTCGACGCG                                                         <  6:35196/99‑1                                                                                                                                                    TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCGTCCCGTCGCCTTTCGACGCG                                                         >  5:35196/1‑99                                                                                                                                                    TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCA                        >  6:40851/1‑132                                                                                                                                                    TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCA                        <  5:40851/132‑1                                                                                                                                                    TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTT                                                                <  6:100859/92‑1                                                                                                                                                    TGGCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCT                                                                  >  5:47399/1‑90                                                                                                                                                      GCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTT     >  5:197375/1‑149                                                                                                                                                      GCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTT     >  4:162120/1‑149                                                                                                                                                      GCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTT     >  2:301770/1‑149                                                                                                                                                      GCGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTT     >  8:168533/1‑149                                                                                                                                                       CGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTC    <  3:42785/149‑1                                                                                                                                                       CGGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTC    <  3:338631/149‑1                                                                                                                                                        GGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC   <  6:169541/149‑1                                                                                                                                                        GGCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC   >  8:196595/1‑149                                                                                                                                                         GCATACCCTGTGCGGCCCTTGGTGGCGC‑GGTTACCCGCCACTTACTACGGCTGCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTGCGCCGCGCGGTAGCACCATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT  <  5:93951/149‑1                                                                                                                                                         GCATAACCTGTTCGGCCCTTGGTGGCGCTGGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCC   >  1:195616/1‑149                                                                                                                                                         GCATAACCTGTTCGGCCCTTGGTGGCGC‑TGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT  <  7:56933/149‑1                                                                                                                                                         GCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT  <  7:42252/149‑1                                                                                                                                                                                                                                                                                                                GCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTCGCGCGAATTACCCTGGGAGATCTGTACGTTTGCCATTGTGCTACCGCGCGTCGAAAGGCGACGGGATGAGCGTGCAGAAGTCAGCCGAAGCCGTAGTAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/741717‑741869 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcggCATAACCTGTTCGGCCCTTGGTGGCGC‑GGTTAACCGCCACTTACTACGGCTTCGGCTGACTTCTGCACGCTCATCCCGTCGCCTTTCGACGCGCGGTAGCACAATGGCAAACGTACAGATCTCCCAGGGTAATTCGCGCGACCTTCCT  <  NC_002947/741902‑741755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.