New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1090249 =	61 (1.130)	3 (0.060)	3/248	NT	5.5%	coding (1110/1380 nt)	fumC‑I	class 2 fumarate hydratase
	?	NC_002947	1090289 =	44 (0.850)					coding (1150/1380 nt)	fumC‑I	class 2 fumarate hydratase

CTTGGCGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1090402‑1090249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatcGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTTGAATCCGATCATCGGCTACCTCAAGGCCGCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGA  >  NC_002947/1090289‑1090434                                                                                                                                                                                                                                                                                                              CTTGGCGATTTCGGCGGCCTTTAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTGGCGCGCGATGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGG                                                                                                                                                         <  5:325858/149‑1     GCGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCAT                                                                                                                                                     <  3:31954/149‑1     GCGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCAT                                                                                                                                                     >  8:26174/1‑149      CGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCATCGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCGTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATC                                                                                                                                                    <  5:54896/149‑1       GATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCAT                                                                                                                                                     >  7:36532/1‑147       GATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACAAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCAT                                                                                                                                                     >  4:178143/1‑147             GGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATC                                                                                                                                                    <  7:112410/142‑1             GGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATC                                                                                                                                                    >  8:112410/1‑142                                                                                                                GGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTT                                                                             >  7:54880/1‑114                                                                                                                GGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTT                                                                             <  8:54880/114‑1                                                                                                                   GATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTTGAATCCGATCATCGGCTACCTCAAGGCCGCCGAAATCG                                       >  4:138167/1‑149                                                                                                                                                     GCCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTTGAATCCGATCATCGGCTACCTCAAGGCCGCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCAT     <  3:138167/149‑1                                                                                                                                                      CCATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTTGAATCCGATCATCGGCTACCTCAAGGCCGCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATC    >  6:299370/1‑149                                                                                                                                                       CATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTTGAATCCGATCATCGGCTACCTCAAGGCCGCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCG   <  1:97185/149‑1                                                                                                                                                        ATCGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTTGAATCCGATCATCGGCTACCTCAAGGCCGCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGA  <  2:115112/149‑1                                                                                                                                                                                                                                                                                                              CTTGGCGATTTCGGCGGCCTTGAGGTAGCCGATGATCGGATTCAACGCCGTGACCAGAATCGGGTTGCGCGCGAGGGCTTCCTTGAGTTTGTCTTCGTTGACCTTGAAGCTGGCGATGGCTTTGTCGGCCAGCAAGCGGCTGACATTGGCCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1090402‑1090249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatcGCCAGCTTCAAGGTCAACGAAGACAAACTCAAGGAAGCCCTCGCGCGCAACCCGATTCTGGTCACGGCGTTGAATCCGATCATCGGCTACCTCAAGGCCGCCGAAATCGCCAAGACCGCCTACAAGCAGGGTCGTCCAATCATCGA  >  NC_002947/1090289‑1090434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.