New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1114870 =	48 (0.890)	5 (0.110)	7/210	NT	12.4%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114946 =	32 (0.730)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase

GTCCGAACAGGCCCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1115042‑1114870 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGTC  >  NC_002947/1114946‑1115092                                                                                                                                                                                                                                                                                                                                   GTCCGAACAGGCCCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCT                                                                                                                                                                             <  3:166357/149‑1       ACAGGCCCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTG                                                                                                                                                                       <  4:311919/149‑1        CAGGCCCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGG                                                                                                                                                                      <  5:249486/149‑1        CAGGCCCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGG                                                                                                                                                                      <  5:189745/149‑1         AGGCCCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGG                                                                                                                                                                      >  6:275009/1‑148            CCCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGC                                                                                                                                                                  <  7:100175/149‑1             CCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCG                                                                                                                                                                 <  2:24411/149‑1             CCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCG                                                                                                                                                                 >  3:38291/1‑149                 GCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCC                                                                                                                                                              <  8:280072/148‑1                 GCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGC                                                                                                                                                               <  4:38291/147‑1                  CCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTT                                                                                                                                                            <  5:353105/149‑1                  CCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTT                                                                                                                                                            <  4:246564/149‑1                    AACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGT                                                                                                                                                          <  3:316335/149‑1                      CTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGT                                                                                                                                                        >  7:25264/1‑149                       TTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTC                                                                                                                                                       >  7:16259/1‑149                         CACCGCGCCGCATGCGCGGTTTGCAGCGCTGTAATCACTCCCGCGCCCGTTGGGGCCGCTGTCCGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCACGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTC                                                                                                                                                       <  8:109630/147‑1                          ACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑GCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGC                                                                                                                                                     <  5:164562/148‑1                          ACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTGGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGC                                                                                                                                                     <  5:203283/148‑1                            CGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAACGCCGCTCCCACAGGCCCGCGCCCACCGTCAAGG‑CGCCCCCCGCCGGTGGGAGCGGCCGTGGGTCGCGca                                                                                                                                                  >  7:109654/1‑147                                CAGCATGCGCGGATTGCAGCGCTGTAATCACTAGCGACACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGG                                                                                                                                              <  6:73904/149‑1                                                                 GAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGT                                                                                                                                                          >  4:127128/1‑104                                                                 GAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGT                                                                                                                                                          <  3:127128/104‑1                                                                                                                   CCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCAT                                                                                       >  5:265329/1‑121                                                                                                                   CCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCAT                                                                                       <  6:265329/121‑1                                                                                                                    CACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAG                                                                 <  5:107630/142‑1                                                                                                                    CACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAG                                                                 >  6:107630/1‑142                                                                                                                                                   CCCTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTC                            <  6:164562/149‑1                                                                                                                                                      TCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCG                         <  6:249486/149‑1                                                                                                                                                      TCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGA                                                     <  6:340137/121‑1                                                                                                                                                      TCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGA                                                     >  5:340137/1‑121                                                                                                                                                        CTGGGGGAGCGGCCTTGTGTCGCGAAAGGGCCGGACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGGTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGC                                    <  2:236931/136‑1                                                                                                                                                                    CCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGG           >  7:281880/1‑149                                                                                                                                                                    CCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCT                           <  6:96818/133‑1                                                                                                                                                                    CCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCT                           >  5:96818/1‑133                                                                                                                                                                      TTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGG         <  4:166357/149‑1                                                                                                                                                                        GTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGG         <  1:302899/147‑1                                                                                                                                                                              CGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGTC  >  7:56823/1‑148                                                                                                                                                                              CGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGTC  >  7:68380/1‑148                                                                                                                                                                                                                                                                                                                                   GTCCGAACAGGCCCTGGCCAACTTCACCGAGCAGCATGCGCGGATTGCAGCGCTGTAATCACTAGAGAGACCGTTGGGGCCGCTGTACGGCCCTTTCGCGACACAAGGCCGCTCCCACAGGACGGCGCCAACCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1115042‑1114870 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGTC  >  NC_002947/1114946‑1115092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.