New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1238554 =	56 (1.040)	3 (0.060)	3/252	NT	5.1%	coding (472/921 nt)	argF	ornithine carbamoyltransferase
	?	NC_002947	1238584 =	57 (1.090)					coding (442/921 nt)	argF	ornithine carbamoyltransferase

CACAGCACCCTGACCGAGTTCGCCGCCAAGTCGCGTGTGCCCGTGATCAACGGCCTGTCCGACGAATCGCACCCGTGCCAACTGCTGGCCGACATGCAGACCTTCGTTGAACACCGCGGCTCGATTCAGGGCAAGACCGTGACCTGGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1238704‑1238554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgAGCCGCGGTGTTCAACGAAGGTCTGCATGTCGGCCAGCAGTTGGCACGGGTGCGATTCGTCGGACAGGCCGTTGATCACGGGCACACGCGACTTGGCGGCGAACTCGGTCAGGGTGCTGTGGGCGTGGGTCCGGATCATCACCACAT  >  NC_002947/1238584‑1238730                                                                                                                                                                                                                                                                                                            CACAGCACCCTGACCGAGTTCGCCGCCAAGTCGCGTGTGCCCGTGATCAACGGCCTGTCCGACGAATCGCACCCGTGCCAACTGCTGGCCGACATGCAGACCTTCGTTGAACACCGCGGCTCGATTCAGGGCAAGACCGTGACCTGGAT                                                                                                                                                       <  5:331967/149‑1                                                             GACGAATCGCACCCGTGCCAACTGCTGGCCGACATGCAGACCTTCGTTGAACACCGCGGCTCGATCCAGGTCACGGTCTTGCCCTGAATCGAGCCGCGGTGTTCAACGAAGGTCTGCATGTCGGC                                                                                                                   <  8:258688/125‑1                                                                                                                        CTCGATTCAGGGCAAGACCGTGACCTGGATCGAGCCGCGGTGTTCAACGAAGGTCTGCATGTCGGCCAGCAGTTGGCACGGGTGCGATTCGTCGGACAGGCCGTTGATC                                                                        <  3:22181/109‑1                                                                                                                        CTCGATTCAGGGCAAGACCGTGACCTGGATCGAGCCGCGGTGTTCAACGAAGGTCTGCATGTCGGCCAGCAGTTGGCACGGGTGCGATTCGTCGGACAGGCCGTTGATC                                                                        >  4:22181/1‑109                                                                                                                                                     TCGAGCCGCGGTGTTCAACGAAGGTCTGCATGTCGGCCAGCAGTTGGCACGGGTGCGATTCGTCGGACAGGCCGTTGATCACGGGCACACGCGACTTGGCGGCGAACTCGGTCAGGGTGCTGTGGGCGTGGGTCCGGATCATCACCACA   >  3:280459/1‑149                                                                                                                                                     TCGAGCCGCGGTCCTCCACGCAGGGCGGCATGGCGGCCAGCAGTTGGCACGGGTGCGATTCGGCGCACAGGCCGCTGATCACGGGCACACGCGACTTGGCGGCGAACTCGGGCAGGGTGCGGTGGGCGTGGGTCCGGATCATCACCACA   <  6:44509/149‑1                                                                                                                                                      CGAGCCGCGGTGTTCAACGAAGGTCTGCATGTCGGCCAGCAGTTGGCACGGGTGCGATTCGTCGGACAGGCCGTTGATCACGGGCACACGCGACTTGGCGGCGAACTCGGTCAGGGTGCTGTGGGCGTGGGTCCGGATCATCACCACA   >  7:168723/1‑148                                                                                                                                                       GAGCCGCGGTGTTCAACGAAGGTCTGCATGTCGGCCAGCAGTTGGCACGGGTGCGATTCGTCGGACAGGCCGTTGATCACGGGCACACGCGACTTGGCGGCGAACTCGGTCAGGGTGCTGTGGGCGTGGGTCCGGATCATCACCACAT  >  3:240601/1‑148                                                                                                                                                                                                                                                                                                            CACAGCACCCTGACCGAGTTCGCCGCCAAGTCGCGTGTGCCCGTGATCAACGGCCTGTCCGACGAATCGCACCCGTGCCAACTGCTGGCCGACATGCAGACCTTCGTTGAACACCGCGGCTCGATTCAGGGCAAGACCGTGACCTGGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1238704‑1238554 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgAGCCGCGGTGTTCAACGAAGGTCTGCATGTCGGCCAGCAGTTGGCACGGGTGCGATTCGTCGGACAGGCCGTTGATCACGGGCACACGCGACTTGGCGGCGAACTCGGTCAGGGTGCTGTGGGCGTGGGTCCGGATCATCACCACAT  >  NC_002947/1238584‑1238730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.