| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1776228 = | 64 (1.180) | 5 (0.100) | 5/250 | NT | 7.2% | coding (304/477 nt) | PP_1583 | structural protein P5 |
| ? | NC_002947 | 1776261 = | 68 (1.310) | coding (337/477 nt) | PP_1583 | structural protein P5 | |||||
CCTCATCGATCAGCGCGGACGGATACGGGTTACCGCCGTTCTCATGCACGATGATGCCCACCACCAGCTCGCGCAGGATCTGCGGCGTGGAAATGTCGATCGAGTCACGCACGCCGACGCCTAGGCGCTTGGCAATGGCCTGCGCGTAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1776378‑1776228‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggcGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCAGATCCTGCGCGAGCTGGTGGTGGGCATCATCGTGCATGAGAACGGCGGTAACCCGTATCCGTCCGCGCTGATCGATGAGGGCATCAGGCGGGCCCTGGCATGAGCCCTT > NC_002947/1776261‑1776407 CCTCATCGATCAGCGCGGACGGATACGGGTTACCGCCGTTCTCATGCACGATGATGCCCACCACCAGCTCGCGCAGGATCTGCGGCGTGGAAATGTCGATCGAGTCACGCACGCCGACGCCTAGGCGCTTGGCAATGGCCTGCGCGTAG > 6:333669/1‑149CCTCATCGATCAGCGCGGACGGATACGGGATACCGCCGTTCTCATGCACGATGATGCCCACCACCAGCTCGCGCAGGATCTGCGGCGTGGAAATGTCGATCGAGTCACGCACGCCGACGCCTAGGCGCTTGGCAATGGCCTGCGCGTAG > 1:199864/1‑149 CTCATCGATCAGCGCGGACGGATACGGGTTACCGCCGTTCTCATGCACGATGATGCCCACCACCAGCTCGCGCAGGATCTGCGGCGTGGAAATGTCGATCGAGTCACGCACGCCGACGCCTAGGCGCTTGGCAATGGCCTGCGCGTAGG > 3:136908/1‑149 TCATCGATCAGCGCGGACGGATACGGGTTACCGCCGTTCTCATGCACGATGATGCCCACCACCAGCTCGCGCAGGATCTGCGGCGTGGAAATGTCGATCGAGTCACGCACGCCGACGCCTAGGCGCTTGGCAATGGCCTGCGCGTAGG > 5:340777/1‑148 ACGCCGACGCCTAGGCGCTTGGCAATGGCCTGCGCGTAGGCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCAGATCCTGCGCGAGCTGGTGGTGGGCATCATCGTGCATGAGAACGGCGGTAACCCGTATCCGTCCGCGCT > 6:324236/1‑148 GCCTAGGCGCTTGGCAATGGCCTGCGCGTAGGCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCAGATCCTGCGCGAGCTGGTGGTGGGCATCATCG < 7:61813/103‑1 GCCTAGGCGCTTGGCAATGGCCTGCGCGTAGGCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCAGATCCTGCGCGAGCTGGTGGTGGGCATCATCG > 8:61813/1‑103 CTAGGCGCTTGGCAATGGCCTGCGCGTAGGCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCAGATCCTGCGAGAGCTGGTGGTGGGCATCATCGTGCATGAGAAAGGCGGTACACCGTATCCGTCCGCGCTGATCGATGAGG > 4:193820/1‑149 ATGGCCTGCGCGTAGGCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCAGATCCTGCGCGAGCTGGTGGTGGGCATCATCGTGCATGAGAACGGCGGTAACCCGTATCCGTCCGCGCTGATCGATGAGGGCATCAGGCGGGCC < 5:324236/149‑1 GCGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCAGATCCTGCGCGAGCTGGTGGTGGGCATCATCGTGCATGAGAACGGCGGTAACCCGTATCCGTCCGCGCTGATCGATGAGGGCATCAGGCGGGCCCTGGCATGAGCCCTT > 3:602/1‑149 CCTCATCGATCAGCGCGGACGGATACGGGTTACCGCCGTTCTCATGCACGATGATGCCCACCACCAGCTCGCGCAGGATCTGCGGCGTGGAAATGTCGATCGAGTCACGCACGCCGACGCCTAGGCGCTTGGCAATGGCCTGCGCGTAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1776378‑1776228‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggcGTCGGCGTGCGTGACTCGATCGACATTTCCACGCCGCAGATCCTGCGCGAGCTGGTGGTGGGCATCATCGTGCATGAGAACGGCGGTAACCCGTATCCGTCCGCGCTGATCGATGAGGGCATCAGGCGGGCCCTGGCATGAGCCCTT > NC_002947/1776261‑1776407 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |