New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 179906245 (0.830)3 (0.060) 3/246 NT 6.3% coding (985/1128 nt) lpxB lipid‑A‑disaccharide synthase
?NC_002947 = 1799086 46 (0.900)coding (1009/1128 nt) lpxB lipid‑A‑disaccharide synthase

TACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1798912‑1799062
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcgGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCGTCGTCCTGCAGCAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAGG  <  NC_002947/1799086‑1798941
                                                                                                                                                                                                                                                                                                         
TACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAG                                                                                                                                                      >  7:90432/1‑149
   AAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCG                                                                                                                                                    >  4:51059/1‑148
                                 GCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGG                                                                                                                      <  3:84854/148‑1
                                  CGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTA                                                                                                                    <  6:210945/149‑1
                                             TTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTG                                                                                                                       >  6:89492/1‑135
                                                                                                                                                    GCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCGTCGTCCTGCAGCAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAGG  <  5:33119/149‑1
                                                                                                                                                    GCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCGTCGTCCTGCAGCAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAGG  >  6:329263/1‑149
                                                                                                                                                                                                                                                                                                         
TACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1798912‑1799062
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagcgGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTAGCGTCGTCCTGCAGCAACTCGGGCACCAGCTCTCGCTGGGCCAGCAGGTTCGGCAATGACACGTAAGGGCTTTTCACCAGACGCTTGAGAATCCAGAAGGTCAAGGGCGCCAGG  <  NC_002947/1799086‑1798941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.