| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2349562 = | 54 (1.000) | 3 (0.060) | 3/246 | NT | 5.2% | coding (1769/3084 nt) | PP_2065 | multidrug RND transporter |
| ? | NC_002947 | 2349617 = | 58 (1.130) | coding (1824/3084 nt) | PP_2065 | multidrug RND transporter | |||||
AGATGCTGCTGCCCTCGATATCCGCAACGGCCTGCTGCAACTGCGCCTGCACCTGTGCGGCGGAACGCTCGCGCGCCTGCCAGGCGCTGAGGTTGATGCCACCGAAACTGGCGGCCGGGCCGTCGGTACCGTTGATGATCCAGGTGTCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2349714‑2349562‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggtggCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATATCGAGGGCAGCAGCATCTTCGCCTTCCAGGTCGCGTCGCTGCCGGGCTCCAGCGGTGGCCTGCCGGTG > NC_002947/2349617‑2349764 AGATGCTGCTGCCCTCGATATCCGCAACGGCCTGCTGCAACTGCGCCTGCACCTGTGCGGCGGAACGCTCGCGCGCCTGCCAGGCGCTGAGGTTGATGCCACCGAAACTGGCGGCCGGGCCGTCGGTACCGTTGATGATCCAGGTGTCG > 6:179741/1‑149 TTGATGCCACCGAAACTGGCGGCCGGGCCGTCGGTACCGTTGATGATCCAGGTGTCGGTGGCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATAT > 2:290655/1‑142 TTGAAGCCACCGAAACTGGCGGCCGGGCCGTCGGTACCGTTGATGATCCAGGTGTCGGTGGCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATAT < 1:290655/142‑1 GATGCCACCGAAACTGGCGGCCGGGCCGTCGGTACCGTTGATGATCCAGGTGTCGGTGGCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATATCGAGGGCAG > 7:112436/1‑149 GGTGGCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATATCGAGGGCAGCAGCATCTTCGCCTTCCAGGTCGTGTCGCTGCCGGGCTCCAGCGGTGGCCTGCC < 2:316375/149‑1 GGTGGCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATATCGAGGGCAGCAGCATCTTCGCCTTCCAGGTCGCGTCGCTGCCGGGCTCCAGCGGTGGCCTGC < 1:1519/148‑1 GTGGCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATATCGAGGGCAGCAGCATCTTCGCCTTCCAGGTCGCGTCGCTGCCGGGCTCCAGCGGTGGCCTGCCG > 4:265941/1‑149 GCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATATCGAGGGCAGCAGCATCTTCGCCTTCCAGGTCGCGTCGCTGCCGGGCTCCAGCGGTGGCCTGCCGGTG > 4:127124/1‑149 AGATGCTGCTGCCCTCGATATCCGCAACGGCCTGCTGCAACTGCGCCTGCACCTGTGCGGCGGAACGCTCGCGCGCCTGCCAGGCGCTGAGGTTGATGCCACCGAAACTGGCGGCCGGGCCGTCGGTACCGTTGATGATCCAGGTGTCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2349714‑2349562‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggtggCATCAACCTCAGCGCCTGGCAGGCGCGCGAGCGTTCCGCCGCACAGGTGCAGGCGCAGTTGCAGCAGGCCGTTGCGGATATCGAGGGCAGCAGCATCTTCGCCTTCCAGGTCGCGTCGCTGCCGGGCTCCAGCGGTGGCCTGCCGGTG > NC_002947/2349617‑2349764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |