New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3460975 =	58 (1.070)	3 (0.060)	3/242	NT	5.5%	coding (400/1017 nt)	PP_3076	ABC transporter permease
	?	NC_002947	3461026 =	50 (0.990)					coding (349/1017 nt)	PP_3076	ABC transporter permease

CCAACTGATCGCTGAACAGGGTGGCTGGATGCTGTTCGCACCTATCCCGTTCAGTGCCGACACACCTAATTACGACCTGCAGGTGCCCACCCCCAGCCCGCCCAGCGCCAGCAACTGGCTAGGCACCGACGACCAAGGCCGTGACGTGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3461129‑3460975 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctggcgcTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGC  >  NC_002947/3461026‑3461165                                                                                                                                                                                                                                                                                                         CCAACTGATCGCTGAACAGGGTGGCTGGATGCTGTTCGCACCTATCCCGTTCAGTGCCGACACACCTAATTACGACCTGCAGGTGCCCACCCCCAGCCCGCCCAGCGCCAGCAACTGGCTAGGCACCGACGACCAAGGCCGTGACGTG                                                                                                                                                     <  6:227939/148‑1    ACTGATCGCTGAACAGGGTGGCTGGATGCTGTTCGCACCTATCCCGTTCAGTGCCGACACACCTAATTACGACCTGCAGGTGCCCACCCCCAGCCCGCCCAGCGCCAGCAACTGGCTAGGCACCGACGACCAAGGCCGTGACGTGCTGG                                                                                                                                                 <  5:99037/149‑1                                                                                                          CGCCAGCAACTGGCTAGGCACCGACGACCAAGGCCGTGACGTGCTGGCGCTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGTGATAGTTGCGAACAGCATCAAGACACCCTGTT                                                    >  4:251313/1‑140                                                                                                          CGCCAGCAACTGGCTAGGCACCGACGACCAAGGCCGTGACGTGCTGGCGCTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTT                                                    <  3:251313/140‑1                                                                                                             CAGCAACTGGCTAGGCACCGACGACCAAGGCCGTGACGTGCTGGCGCTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCCCCCTGTTCAGCGATCAGTT                                        >  3:200617/1‑149                                                                                                                                                    GCTGGCGCTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGC  <  1:15146/148‑1                                                                                                                                                    GCTGGCGCTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTAAGCGATCAGTTGGCGCACATAGGAGCTGCGGTAGTCGCGCTGAAACGG   >  1:337725/1‑147                                                                                                                                                                                                                                                                                                         CCAACTGATCGCTGAACAGGGTGGCTGGATGCTGTTCGCACCTATCCCGTTCAGTGCCGACACACCTAATTACGACCTGCAGGTGCCCACCCCCAGCCCGCCCAGCGCCAGCAACTGGCTAGGCACCGACGACCAAGGCCGTGACGTGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3461129‑3460975 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctggcgcTGGGCGGGCTGGGGGTGGGCACCTGCAGGTCGTAATTAGGTGTGTCGGCACTGAACGGGATAGGTGCGAACAGCATCCAGCCACCCTGTTCAGCGATCAGTTGGCGCACATAGGCGCTGCGGTAGTCGGGCTGAAACGGC  >  NC_002947/3461026‑3461165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.