| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3472582 = | 60 (1.110) | 5 (0.100) | 5/248 | NT | 8.6% | intergenic (‑51/+57) | PP_3084/PP_3085 | ferric siderophore receptor/transmembrane sensor |
| ? | NC_002947 | 3472661 = | 49 (0.950) | coding (944/966 nt) | PP_3085 | transmembrane sensor | |||||
CACCGATGCCAGCCTGCGGCTGCTGAGCGACACCCTGCCGGTGAACATTCAGGGCATGACCCGCTACTGGGTAACTGTGGAGCCACACGTGTGAAGCCCTGGCAACGCTCCCGGTGATCGCGCCAAGCTTCAACGTGTGAGCAGGACAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3472732‑3472582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAATGCGCCAGACACCTTCAGCTCTCGCACTGCCGGGTGGCAGCGCAGCACGCCGGGGCGA > NC_002947/3472661‑3472804 CACCGATGCCAGCCTGCGGCTGCTGAGCGACACCCTGCCGGTGAACATTCAGGGCATGACCCGCTACTGGGTAACTGTGGAGCCACACGTGTGAAGCCCTGGCAACGCTCCCGGTGATCGCGCCAAGCTTCAACGTGTGAGCAGGACAG < 4:189577/149‑1 GCTACTGGGTAACTGTGGAGCCACACGTGTGAAGCCCTGGCAACGCTCCCGGTGATCGCGCCAAGCTTCAACGTGTGAGCAGGACAGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGG > 4:27796/1‑149 CTGGGTAACTGTGGAGCCACACGTGTGAAGCCCTGGCAACGCTCCCGGTGATCGCGCCAAGCTTCAACGTGTGAGCAGGACAGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGG > 4:93062/1‑149 ACTGTGGAGCCACTCGTGTGAAGCCCTGGCAACGCTCCCGGTGATCGCGCCAAGCTTCAACGTGTGAGCAGGACAGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGT < 3:93062/149‑1 AGCCACACGTGTGAAGCCCTGGCAACGCTCCCGGTGATCGCGCCAAGCTTCAACGTGTG‑GCTCCACAGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCCGGCTGGCATCGGTGTCGGCCA > 8:303129/1‑149 CGTGTGAAGCCCTGGCAACGCTCCCGGTGATCGCGCCAAGCTTCAACGTGTG‑GCTCCACAGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAA < 7:303129/149‑1 GGACAGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAATGCGCCAGACACCTTCAGCTCTCGCACTGCCGGGTGGCAGCGCAGCACGCCGGGG < 3:27796/149‑1 CAGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAATGCGCCAGACACCTTCAGCTCTCGCACTGCCGGGTGGCAGCGCAGCACGCCGGGGCGA > 2:97728/1‑149 AGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCTCCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAATGC < 4:106819/93‑1 AGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAATGCGCCAGACACCTTCAGCTCTCGCACTGCCGGGTGGC > 3:55300/1‑128 AGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAATGCGCCAGACACCTTCAGCTCTCGCACTGCCGGGTGGC < 4:55300/128‑1 AGTTACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAATGC > 3:106819/1‑93 CACCGATGCCAGCCTGCGGCTGCTGAGCGACACCCTGCCGGTGAACATTCAGGGCATGACCCGCTACTGGGTAACTGTGGAGCCACACGTGTGAAGCCCTGGCAACGCTCCCGGTGATCGCGCCAAGCTTCAACGTGTGAGCAGGACAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3472732‑3472582‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acagttACCCAGTAGCGGGTCATGCCCTGAATGTTCACCGGCAGGGTGTCGCTCAGCAGCCGCAGGCTGGCATCGGTGTCGGCCAGCGGGAATGCGCCAGACACCTTCAGCTCTCGCACTGCCGGGTGGCAGCGCAGCACGCCGGGGCGA > NC_002947/3472661‑3472804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |