New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4030491	45 (0.830)	5 (0.100)	5/246	NT	9.1%	coding (154/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4030519	57 (1.110)					coding (182/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein

GATGACCACTTATTCCGCCCCCCTGCGCGACATGCGCTTCGTCCTGCATGACGTGTTCAACGCTTCGGGCCTGTGGGCCCGACTGCCCGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCTCGAGGAAGCATCCAAAGTCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4030337‑4030491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcaccgTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTTGGATGCTTCCTCGAGAATGGCGTCGGCAGTATCGGCATCGATGCGTTCGGCCAGGGCGGGCAGTCGGGCCCACAGGCCCGAAGCGTTGAACACGTCATGCAGGA  <  NC_002947/4030519‑4030378                                                                                                                                                                                                                                                                                                           GATGACCACTTATTCCGCCCCCCTGCGCGACATGCGCTTCGTCCTGCATGACGTGTTCAACGCTTCGGGCCTGTGGGCCCGACTGCCCGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCTCGAGGAAGCATCCAAAG                                                                                                                                                      <  6:342009/149‑1      CCACTTATTCCGCCCCCCTGCGCGACATGCGCTTCGTCCTGCATGACGTGTTCAACGCTTCGGGCCTGTGGGCCCGACTGCCCGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCTCGAGGAAGCATCCAAAGTCACC                                                                                                                                                 >  3:4098/1‑149                                         GTCCTGCATGACGTGTTCAACGCTTCGGGCCGGTGGGCCCGACTGCCCGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCTCGAGGAAGCATCCAAAGTCACCGTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGA                                                                                                              <  3:199799/149‑1                                                     GTGTTCAACGCTTCGGGCCTGTGGGCCCGACTGCCCGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCTCGAGGAAGCATCCAAAGTCACCGTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTTGGAT                                                                                                      >  3:304267/1‑145                                                     GTGTTCAACGCTTCGGGCCTGTGGGCCCGACTGCCCGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCTCGAGGAAGCATCCAAAGTCACCGTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTTGGAT                                                                                                      <  4:304267/145‑1                                                                                        CGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCTCGAGGAAGCATCCAAAGTCACCGTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTT                                                                                                          <  2:244604/106‑1                                                                                        CGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCGGGAGGAAGCATCCAAAGTCACCGTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTT                                                                                                          >  1:244604/1‑106                                                                                                                                                   tAGTCACCGTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTTGGATGCTTCCTCGAGAATGGCGTCGG                                                                                <  6:254430/72‑1                                                                                                                                                     GTCACCGTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTTGGATGCTTCCTCGAGAATGGCGTCGGCAGTATCGGCATCGATGCGTTCGGCCAGGGCGGGCAGTCGGGCCCACAGGCCCGAAGCGTTGAACACGTCATGCAGGA  <  3:28558/149‑1                                                                                                                                                     GTCACCGTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTTGGATGCTTCCTCGAGAATGGCGTCGGCAGTATCGGCATCGATGCGTTCGGCCAGGGCGGGCAGTCGGGCCCACAGGCCCGAAGCGTTGAACACGTCATGCAGG   <  4:55268/148‑1                                                                                                                                                                                                                                                                                                           GATGACCACTTATTCCGCCCCCCTGCGCGACATGCGCTTCGTCCTGCATGACGTGTTCAACGCTTCGGGCCTGTGGGCCCGACTGCCCGCCCTGGCCGAACGCATCGATGCCGATACTGCCGACGCCATTCTCGAGGAAGCATCCAAAGTCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4030337‑4030491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcaccgTTGCGGCTGAGCGGGGCGATCAGCTGGCCGGTGACTTTGGATGCTTCCTCGAGAATGGCGTCGGCAGTATCGGCATCGATGCGTTCGGCCAGGGCGGGCAGTCGGGCCCACAGGCCCGAAGCGTTGAACACGTCATGCAGGA  <  NC_002947/4030519‑4030378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.