| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4326196 = | 55 (1.020) | 3 (0.060) | 3/246 | NT | 5.7% | coding (674/1335 nt) | pvdA | L‑ornithine 5‑monooxygenase |
| ? | NC_002947 | 4326233 = | 48 (0.940) | coding (711/1335 nt) | pvdA | L‑ornithine 5‑monooxygenase | |||||
TTTGCTGCGCTGGTCGGCCGGTTCGTTGTAGACCAGGTCGGTATAGTCGGGCGAGAAGATCTCATTGACGAAGGGGCTGTCGTCGGCGGGCTTGAGGGCCGAGCCGCGCAGAATCATGTCGACCTTGACTGACGGATAGCTGTCGTTGAGGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4326350‑4326196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtcgaCATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAACCGGCCGACCAGCGCAGCAAACTGCTGGGCGAATACCACAACACCAA > NC_002947/4326233‑4326376 TTTGCTGCGCTGGTCGGCCGGTTCGTTGTAGACCAGGTCGGTATAGTCGGGCGAGAAGATCTCATTGACGAAGGGGCTGTCGTCGGCGGGCTTGAGGGCCGAGCCGCGCAGAATCATGTCGACCTTGACTGACGGATAGCTGTCGTTGA < 8:88495/149‑1 TGCTGCGCTGGGCGGCCGGTTCGTTGGAGACCAGGTCGGTTTAGTCGGCCGAGAAGATCTCATTGACGAATGGGCTGTCGTCGGCGGGCTTGAGGGCCGAGCCGCGCAGAATCATGTCGACCTTGACTGACGGATAGCTGTCGTTGAG < 6:156204/148‑1 ATGTCGACCTTGACTGACGGATAGCTGTCGTTGAGGTCGACATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAACCGGCCGACCAG > 3:80642/1‑149 ATGTCGACCTTGACTGACGGATAGCTGTCGTTGAGGTCGACATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAAC < 1:135652/138‑1 GTCGACCTTGACTGACGGATAGCTGTCGTTGAGGTCGACATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAACCGGCCGACCAGCG > 2:38846/1‑149 GGTCGACATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAACCGGCCGACCAGCGCAGCAAACTGCTGGGCGAATACCACAACACCA < 6:90/149‑1 GTCGACATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAACCGGCCGACCAGCGCAGCAAACTGCTGGGCGAATACCACAACACCAA < 1:307940/149‑1 GACATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAACCGGCC > 1:199640/1‑105 GACATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAACCGGCC < 2:199640/105‑1 TTTGCTGCGCTGGTCGGCCGGTTCGTTGTAGACCAGGTCGGTATAGTCGGGCGAGAAGATCTCATTGACGAAGGGGCTGTCGTCGGCGGGCTTGAGGGCCGAGCCGCGCAGAATCATGTCGACCTTGACTGACGGATAGCTGTCGTTGAGGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4326350‑4326196‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggtcgaCATGATTCTGCGCGGCTCGGCCCTCAAGCCCGCCGACGACAGCCCCTTCGTCAATGAGATCTTCTCGCCCGACTATACCGACCTGGTCTACAACGAACCGGCCGACCAGCGCAGCAAACTGCTGGGCGAATACCACAACACCAA > NC_002947/4326233‑4326376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |