New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4445380 =	64 (1.180)	4 (0.080)	3/250	NT	6.1%	coding (220/753 nt)	nicE	maleate isomerase
	?	NC_002947	4445418 =	61 (1.170)					coding (182/753 nt)	nicE	maleate isomerase

CGGCGATGCTCAACGCACGCCAGGCGATCCGCCCCGAGCGGTTCACCTTCCATTCCAGCCGCATGCGCATGAAGCAGGTGAAGAAGGAAGAACTGGCCGCGATGGACGCCGAGTCCGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4445532‑4445380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGACTCGGCGTCCATCGCGGCCAGTTCTTCCTTCTTCACCTGCTTCATGCGCATGCGGCTGGAATGGAAGGTGAACCGCTCGGGGCGGATCGCCTGGCGTGCGTTGAGCATC  >  NC_002947/4445418‑4445528                                                                                                                                                                                                                                                                          CGGCGATGCTCAACGCACGCCAGGCGATCCGCCCCGAGCGGTTCACCTTCCATTCCAGCCGCATGCGCATGAAGCAGGTGAAGAAGGAAGAACTGGCCGCGATGGACGCCGAGTCCGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAG                                                                                                                     <  7:288160/149‑1   GCGATGCTCAACGCACGCCAGGCGTTCCGCCCCGAGCGGTTCACCTTCCATTCCAGCCGCATGCGCATGAAGCAGGTGAAGAAGGAAGAACTGGCCGCGATGGACGCCGAGTCCGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGT                                                                                                                   >  7:210770/1‑149   GCGATGCTCAACGCACGCCAGGCGATCCGCCCCGAGCGGTTCACCTTCCATTCCAGCCGCATGCGCATGAAGCAGGTGAAGAAGGAAGAACTGGCCGCGATGGACGCCGAGTCCGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGT                                                                                                                   <  6:27847/149‑1   GCGATGCTCAACGCACGCCAGGCGATCCGCCCCGAGCGGTTCACCTTCCATTCCAGCCGCATGCGCATGAAGCAGGTGAAGAAGGAAGAACTGGCCGCGATGGACGCCGAGTCCGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGT                                                                                                                   <  6:324555/149‑1                                                                                                               GAGTCCGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGTCGGACTCGGCGTCCATCGCGGCCAGTTCTTCCTTCTTCACCTGCTTCATGCGCATGCGGCTGGAATGGAAGGTGAACCGCTCGGGGCGGATCGCCTGGCGTGCGTT         >  5:162272/1‑147                                                                                                                    CGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGTCGGACTCGGCGTCCATCGCGGCCAGTTCTTCCTTCTTCACCTGCTTCATGCGCATGCGGCTGGAATGGAAGGTGAACCGCTCGGGGCGGATAGCCTGGCGTGCGTTGAGCCTC  >  2:270831/1‑149                                                                                                                    CGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGTCGGACTCGGCGTCCATCGCGGCCAGTTCTTCCTTCTTCACCTGCTTCATGCGCATGCGGCTGGAATGGAAG                                            >  1:326981/1‑107                                                                                                                    CGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGTCGGACTCGGCGTCCATCGCGGCCAGTTCTTCCTTCTTCACCTGCTTCATGCGCATGCGGCTGGAATGGAAG                                            <  2:326981/107‑1                                                                                                                                                                                                                                                                          CGGCGATGCTCAACGCACGCCAGGCGATCCGCCCCGAGCGGTTCACCTTCCATTCCAGCCGCATGCGCATGAAGCAGGTGAAGAAGGAAGAACTGGCCGCGATGGACGCCGAGTCCGACCGCTGCGCAGTCGAGCTGTCCGACGCCAAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4445532‑4445380 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGACTCGGCGTCCATCGCGGCCAGTTCTTCCTTCTTCACCTGCTTCATGCGCATGCGGCTGGAATGGAAGGTGAACCGCTCGGGGCGGATCGCCTGGCGTGCGTTGAGCATC  >  NC_002947/4445418‑4445528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.