New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5252370	45 (0.830)	4 (0.080)	4/246	NT	7.0%	coding (147/456 nt)	PP_4628	hypothetical protein
	?	NC_002947	= 5252435	63 (1.230)					coding (82/456 nt)	PP_4628	hypothetical protein

CAGGCAGGCCGCGCCAGGCCGCAGGCAGTGTGTCACGAAGGGTGCTGTACAGCGGCATGAGGTTGTCCGGCAACTCACCCATGCCGGTGGTAGAGGTCACGGCCAGCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5252258‑5252370 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggcgGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGCTGGCCGTGACCTCTACCACCGGCATGGGTGAGTTGCCGGACAACCTCATGCCGCTGTACAGCACCCTTCGTGAC  <  NC_002947/5252435‑5252289                                                                                                                                                                                                                                                                      CAGGCAGGCCGCGCCAGGCCGCAGGCAGTGTGTCACGAAGGGTGCTGTACAGCGGCATGAGGTTGTCCGGCAACTCACCCATGCCGGTGGTAGAGGTCACGGCCAGCAAGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACC                                                                                                                 >  7:305905/1‑149                                       AGGGTGCTGTACAGCGGCATGAGGTTGTCCGGCAACTCACCCATGCCGGTGGTAGAGGTCACGGCCAGCAAGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGCT                                                                           <  8:305905/149‑1                                                              GTTGTCCGGCAACTCACCCATGCCGGTGGTAGAGGTCACGGCCAGCAAGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGC                                                                            <  1:69372/125‑1                                                              GTTGTCCGGCAACTCACCCATGCCGGTGGTAGAGGTCACGGCCAGCAAGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGC                                                                            >  2:69372/1‑125                                                                                                             AGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCATGATCTTCAGGGCTTTGCCCCCGACGCCTTGCTGGCCGTGACCTCTACCACCGGCATGGGTGAGTTGCCGGACAACCTCATGCCGCTGTACAGCACCCTTCGT     <  6:5932/149‑1                                                                                                             AGGCGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGCTGGCCGTGACCTCTACCACCGGCATGGGTGAGTTGCCGGACAACCTCATGCCGCTGTACAGCACCCTTCGT     <  4:152107/149‑1                                                                                                                CGGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGCTGGCCGTGACCTCTACCACCGGCATGGGTGAGTTGCCGGACAACCTCATGCCGCTGTACAGCACCCTTCGTGAC  <  6:196663/149‑1                                                                                                                 GGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGCTGGCC                                                                       >  7:267382/1‑79                                                                                                                 GGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGCTGGCC                                                                       <  8:267382/79‑1                                                                                                                                                                                                                                                                      CAGGCAGGCCGCGCCAGGCCGCAGGCAGTGTGTCACGAAGGGTGCTGTACAGCGGCATGAGGTTGTCCGGCAACTCACCCATGCCGGTGGTAGAGGTCACGGCCAGCAAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5252258‑5252370 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggcgGCGGGGTTCGAGGCCTGGCATGCTGCGCGTGCCACCCTTCAGGATCTTCAGGGCTTTGCCCCCGACGCCTTGCTGGCCGTGACCTCTACCACCGGCATGGGTGAGTTGCCGGACAACCTCATGCCGCTGTACAGCACCCTTCGTGAC  <  NC_002947/5252435‑5252289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.