New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5273547	59 (1.090)	3 (0.060)	3/246	NT	5.1%	coding (694/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G
	?	NC_002947	= 5273617	56 (1.090)					coding (764/1125 nt)	rlmG	ribosomal RNA large subunit methyltransferase G

CCGAGCGGCCGCTCGCCAAGTCCCCCTACCCCAGCTGCTACCGCCTCGACGCGCCGGCACTTGACTTGGTCAACCACGCCAACGTGTTCTGCCGTGAAGGCCTGGATATCGGGACGCGGGCGTTCCTCCCGCATCTACCACGCAACCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5273395‑5273547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggccTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCGTTGCCGCAGCCCAGGTCTGCCACCCGCGCACGGCCGAGGTTGCGTGGTAGATGCGGGAGGAACGCCCGCGTCCCGATATCCAGGCCTTCACGGCAGAACACGTTGGCGT  <  NC_002947/5273617‑5273470                                                                                                                                                                                                                                                                                                               CCGAGCGGCCGCTCGCCAAGTCCCCCTACCCCAGCTGCTACCGCCTCGACGCGCCGGCACTTGACTTGGTCAACCACGCCAACGTGTTCTGCCGTGAAGGCCTGGATATCGGGACGCGGGCGTTCCTCCCGCATCTACCACGCAACCTC                                                                                                                                                          >  6:273810/1‑149    AGCGGCCGCTCGCCAAGTCCCCCTACCCCAGCTGCTACCGCCTCGACGCGCCGGCACTTGACTTGGTCAACCACGCCAACGTGTTCTGCCGTGAAGGCCTGGATATCGGGACGCGGGCGTTCCTCCCGCATCTACCACGCAACCTCGGC                                                                                                                                                       <  3:119526/149‑1                                            CCTCGACGCGCCGGCACTTGACTTGGTCAACCACGCCAACGTGTTCTGCCGTGAAGGCCTGGATATCGGGACGCGGGCGTTCCTCCCGCATCTACCACGCAACCTCGGCCTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCG                                                                                                               >  3:23721/1‑149                                                                              GCCAACGTGTTCTGCCGTGAAGGCCTGGATATCGGGACGCGGGCGTTCCTCCCGCATCTACCACGCAACCTCGGCCTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCGTTGCCGCAGCCCAGGTCTGCCACCCGCGCACGGC                                                                             <  4:23721/149‑1                                                                                 AACGTGTTCTGCCGTGAAGGCCTGGATATCGGGACGCGGGCGTTCCTCCCGCATCTACCACGCAACCTCGGCCTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCGTTGCCGCAGCCCAGGTCTGCCACCCGCGCACGGCCGA                                                                          <  1:315408/149‑1                                                                                                                                                   CTCGGCCTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCGTTGCCGCAGCCCAGGTCTGCCACCCGCGCACGGCCGAGGTTGCGTGGTAGATGCGGGAGGAACGCCCGCGTCCCGATATCCAGGCCTTCAC                    <  3:333639/137‑1                                                                                                                                                   CTCGGCCTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCGTTGCCGCAGCCCAGGTCTGCCACCCGCGCACGGCCGAGGTTGCGTGGTAGATGCGGGAGGAACGCCCGCGTCCCGATATCCAGGCCTTCAC                    >  4:333639/1‑137                                                                                                                                                    TCGGCCTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCGTTGCCGCAGCCCAGGTCTGCCACCCGCGCACGGCCGAGGTTGCGTGGTAGATGCGGGAGGAACGCCCGCGTCCCGATATCCAGGCCTTCACGGCAGAACACGTT       >  1:138793/1‑149                                                                                                                                                    TCGGCCTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCGTTGCCGCAGCCCAGGTCTGCCACCCGCGCACGGCCGAGGTTGCGTGGTAGATGCGGGAGGAACGCCCGCGTCCCGATATCCAGGCCTTCACGGCAGAACACGTT       >  6:204778/1‑149                                                                                                                                                         CTCCGGGTTGGCGAGGGCGCTGGCGATCTCGAGCACGCCGTTGCCTCAGCCCAGGTCTGCCACCCGCGCACGGCCGAGGTTGCGTGGTAGATGCGGGAGGAACGCACGCGTCCCGATATCCAGGCCTTCACGGCAGAACACGTTGGCGT  <  8:155482/149‑1                                                                                                                                                                                                                                                                                                               CCGAGCGGCCGCTCGCCAAGTCCCCCTACCCCAGCTGCTACCGCCTCGACGCGCCGGCACTTGACTTGGTCAACCACGCCAACGTGTTCTGCCGTGAAGGCCTGGATATCGGGACGCGGGCGTTCCTCCCGCATCTACCACGCAACCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5273395‑5273547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcggccTCCGGGTTGGCCAGGGCGCTGGCGATCGCGAGCACGCCGTTGCCGCAGCCCAGGTCTGCCACCCGCGCACGGCCGAGGTTGCGTGGTAGATGCGGGAGGAACGCCCGCGTCCCGATATCCAGGCCTTCACGGCAGAACACGTTGGCGT  <  NC_002947/5273617‑5273470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.