New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5445939 =	52 (0.960)	5 (0.100)	5/244	NT	8.3%	coding (84/624 nt)	thiE	thiamine‑phosphate synthase
	?	NC_002947	5445996 =	62 (1.220)					coding (141/624 nt)	thiE	thiamine‑phosphate synthase

ACGCCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5446094‑5445939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcctGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCCGCCTGGGTGTCGGCGTGCACCTGGGCCAGACCGACGGCCCGCTGACCCCGGCCCGCGCACT  >  NC_002947/5445996‑5446139                                                                                                                                                                                                                                                                                                              ACGCCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACAC                                                                                                                                                         >  2:62489/1‑149    CCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCC                                                                                                                                                      >  3:246525/1‑149     CGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCCGCAGACACACGCCG                                                                                                                                                     >  3:281255/1‑149                                                                       AGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTGGGTCTTGTCGCGGTACTGCAGCAGACACCCGCCGCCTGCGTGAAGCCGGAGGGCGGATGAAGCTCTGCGAGCGTTACGGCCCCCCGGTGGTGATCAACGA                                                                                   >  4:183575/1‑149                                                                                           GCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCC                                                               >  8:90854/1‑149                                                                                                  GCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACCCCGCCTGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGCTCAACGCTGACGCCGCACAGCCCGCCCGCCTCGG                                                        >  4:333829/1‑149                                                                                                   CAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCTGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCCGCCTGGGT                                                       <  7:90854/149‑1                                                                                                                           CTTGCCGCGGTACTGCAGCAGCCACACGCCGCCGGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCCGCCTGGGTGTCGGCGTGCACCTGGGCCAGACC                               <  3:183575/149‑1                                                                                                                                                      GCCGCCTGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCCGCCTGGGTGTCGGC                                                 >  3:329776/1‑104                                                                                                                                                      GCCGCCTGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCCGCCTGGGTGTCGGC                                                 <  4:329776/104‑1                                                                                                                                                        CGCCTGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCCGCCTGGGTGTCGGCGTGCACCTGGGCCAGACCGACGGCCCGCTGACCCCGGCCCGCGCACT  <  6:326609/149‑1                                                                                                                                                        CGCCTGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCCGCCTGGGTGTCGGCGTGCACCTGGGCCAGACCGACGGCCCGCTGACCCCGGCCCGCGCACT  >  6:85761/1‑149                                                                                                                                                                                                                                                                                                              ACGCCGACACCCAGGCGGGCGGCCAGTTCGGCGTCATCGTTGATCAGCAACTGGGTGCCGTAACGCTCGCAGAGCTTCATCAGCCCTTCGGCTTCACGCAGGCGGCGCGCAGCATCGTCGGTCTTGTCGCGGTACTGCAGCAGACACACGCCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5446094‑5445939 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgcctGCGTGAAGCCGAAGGGCTGATGAAGCTCTGCGAGCGTTACGGCACCCAGTTGCTGATCAACGATGACGCCGAACTGGCCGCCCGCCTGGGTGTCGGCGTGCACCTGGGCCAGACCGACGGCCCGCTGACCCCGGCCCGCGCACT  >  NC_002947/5445996‑5446139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.