New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5716610	52 (0.960)	4 (0.080)	4/250	NT	7.0%	coding (118/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	= 5716637	57 (1.100)					coding (145/708 nt)	PP_5019	16S rRNA (uracil(1498)‑N(3))‑methyltransferase

GACGACCATAACGACCAGCCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCGTCGTTCTTGCTGATCGGCGCTTCACCCATATGCAGGAAATCCACCGCGTGGCAGTGGGCGACAACCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5716458‑5716610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcCCATCAGGCCGTTGATACGGCCCACGCGCAGGTTGTCGCCCACTGCCACGCGGTGGATTTCCTGCATATGGGTGAAGCGCCGATCAGCAAGAACGACGCGGTTGGCCGAGACGAAGTCGGCCTCTTCAAGAAGCAACAGGTTCACGGT  <  NC_002947/5716637‑5716490                                                                                                                                                                                                                                                                                                               GACGACCATAACGACCAGCCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCGTCGTTCTTGCTGATCGGCGCTTCACCCATATGCAGGAAATCCACCGCGTGGCAGTGGGCGACAAC                                                                                                                                                          <  6:201878/149‑1                                     TGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCTGCCAACCGCGTCGTTCTTGCTGATAGGCGCATCACCCATATGCAGGAAATCCACCGAGTGCCAGTGGGCGACAACCTGCCCATAAGGCCGTAGATACTGACAACGCGCAGG                                                                                                                      >  3:82072/1‑149                                         gCTGTTGCTTCTTGAAGAGGGAGACTTCGTCTCGGCGAACCGCGTCGTTCTTGCTGATCGGCGCTTCACACATATGCAGGAAATCCACCGCGTGGCAGTGGGCGACAACCTGCCCATCAGGCCGTTGATACGGCCCACGCGCAGGTTGT                                                                                                                  <  4:82072/148‑1                                                     TGAAGAGGCCGACTTCGTCTCGGCCAACCGCGTCGTTCTTGCTGATCGGGGCTTCACCCATATGCAGGAAATCCACCGCGTGGCAGTGGGCGACAACCTGCCCATCAGGCCGTTGATACGGCCCACGCGCAGG                                                                                                                      >  4:194747/1‑133                                                     TGAAGAGGCCGACTTCGTCTCGGCCAACCGCGTCGTTCTTGCTGATCGGCGCTTCACCCATATGCAGGAAATCCACCGCGTGGCAGTGGGCGACAACCTGCCCATCAGGCCGTTGATACGGCCCACGCGCAGG                                                                                                                      <  3:194747/133‑1                                                                                                                                                     CCTGCCCATCAGGCCGTTGATACGGCCCACGCGCAGGTTGTCGCCCACTGCCACGCGGTGGATTTCCTGCATATGGGTGAAGCGCCGATCAGCAAGAACGACG                                                    >  1:305775/1‑103                                                                                                                                                     CCTGCCCATCAGGCCGTTGATACGGCCCACGCGCAGGTTGTCGCCCACTGCCACGCGGTGGATTTCCTGCATATGGGTGAAGCGCCGATCAGCAAGAACGACG                                                    <  2:305775/103‑1                                                                                                                                                         CCCATCAGGCCGTTGATACGGCCCACGCGCAGGTTGTCGCCCACTGCCACGCGGTGGATTTCCTGCATATGGGTGAAGCGCCGATCAGCAAGAACGACGCGGTTGGCCGAGACGAAGTCGGCCTCTTCAAGAAGCAACAGGTTCACGGT  >  5:238729/1‑149                                                                                                                                                                                                                                                                                                               GACGACCATAACGACCAGCCACCAGCGACCCAACCGTGAACCTGTTGCTTCTTGAAGAGGCCGACTTCGTCTCGGCCAACCGCGTCGTTCTTGCTGATCGGCGCTTCACCCATATGCAGGAAATCCACCGCGTGGCAGTGGGCGACAACCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5716458‑5716610 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcCCATCAGGCCGTTGATACGGCCCACGCGCAGGTTGTCGCCCACTGCCACGCGGTGGATTTCCTGCATATGGGTGAAGCGCCGATCAGCAAGAACGACGCGGTTGGCCGAGACGAAGTCGGCCTCTTCAAGAAGCAACAGGTTCACGGT  <  NC_002947/5716637‑5716490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.