| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5871822 = | 64 (1.180) | 3 (0.060) | 3/242 | NT | 5.3% | coding (831/2280 nt) | ptsP | phosphoenolpyruvate‑dependent regulator |
| ? | NC_002947 | 5871876 = | 48 (0.950) | coding (777/2280 nt) | ptsP | phosphoenolpyruvate‑dependent regulator | |||||
GACGACATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCTGTTCGACGTCTATCTGATGATGCTTGAAGACGCAGCCCTGGGCGGTGAGGTGACCGAGGTCATCAAGACCGGCCAATGGGCCCAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5871971‑5871822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagggcTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGAT > NC_002947/5871876‑5872019 GACGACATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCTGTTCGACGTCTATCTGATGATGCTTGAAGACGCAGCCCTGGGCGGTGAGGTGACCGAGGTCATCAAGACCGGCCAATGGGCCCAGGG > 2:114355/1‑149GACGACATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCTGTTCGACGTCTATCTGATGATGCTTGAAGACGCAGCCCTGGGCGGTGAGGTGACCGAGGTCATCAAGACCGGCCAATGGGCCCAGGG > 2:306247/1‑149 AGCCCTGGGCGGTGAGGTGACCGAGGTCATCAAGACCGGCCAATGGGCCCAGGGCTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCGCATGTCG > 3:85312/1‑149 CCTGGGCGGTGAGGTGACCGAGGTCATCAAGACCGGCCAATGGGCCCAGGGCTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCG < 1:278923/139‑1 CCTGGGCGGTGAGGTGACCGAGGTCATCAAGACCGGCCAATGGGCCCAGGGCTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCG > 2:278923/1‑139 TGGGCCCAGGGCTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGG < 4:85312/149‑1 GCCCAGGGCTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGT > 3:334306/1‑149 CCAGGGCTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCG < 2:345913/149‑1 AGGGCTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGAT < 3:177992/149‑1 GACGACATGCGCAAGCTGTCGGCCAAACTGGCCACCCAGCTGCGCCCGGAAGAGCGTGCGCTGTTCGACGTCTATCTGATGATGCTTGAAGACGCAGCCCTGGGCGGTGAGGTGACCGAGGTCATCAAGACCGGCCAATGGGCCCAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5871971‑5871822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccagggcTGCGTCTTCAAGCATCATCAGATAGACGTCGAACAGCGCACGCTCTTCCGGGCGCAGCTGGGTGGCCAGTTTGGCCGACAGCTTGCGCATGTCGTCGCGCACACCTTCCAGGGCGTTCTGGAACAGCTTGAGTTCGGCGTCGAT > NC_002947/5871876‑5872019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |