New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5989280	56 (1.040)	3 (0.060)	3/232	NT	5.9%	noncoding (29/87 nt)	PP_mr64	C4 ncRNA
	?	NC_002947	= 5989327	45 (0.930)					noncoding (76/87 nt) coding (38/399 nt)	PP_mr64 PP_5247	C4 ncRNA hypothetical protein

GTTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5989119‑5989280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagttgtgcgcgGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAGCTGGCTTTCC  <  NC_002947/5989327‑5989180                                                                                                                                                                                                                                                                                                                        GTTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCCGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTTCCGTTATG                                                                                                                                                                   >  5:60822/1‑149  TTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGG                                                                                                                                                                  <  2:79681/149‑1  TTCACACCAATACCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGG                                                                                                                                                                  <  7:280265/149‑1     ACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAG                                                                                                                                                               <  6:341843/149‑1       ACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTT                                                                                                                                                             >  8:24295/1‑149       ACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTT                                                                                                                                                             <  4:22156/149‑1       ACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTT                                                                                                                                                             <  2:113884/149‑1               CAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGG                                                                                                                                                     >  5:157444/1‑149                                                                       GCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAAC                                                                                             <  6:157444/149‑1                                                                                      CAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCC                                                                                         >  2:273455/1‑138                                                                                      CAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCC                                                                                         <  1:273455/138‑1                                                                                                                                                     GGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTA                 >  7:131597/1‑147                                                                                                                                                      GCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAG              >  7:160301/1‑149                                                                                                                                                        AGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAG            <  4:283245/149‑1                                                                                                                                                         GTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAGC           <  8:108310/149‑1                                                                                                                                                            GTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGT                        >  4:96759/1‑133                                                                                                                                                            GTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGT                        <  3:96759/133‑1                                                                                                                                                                  GGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAGCTGGCTTTCC  <  6:256202/149‑1                                                                                                                                                                                                                                                                                                                        GTTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5989119‑5989280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagttgtgcgcgGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAGCTGGCTTTCC  <  NC_002947/5989327‑5989180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.