New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6009263 =	67 (1.240)	9 (0.180)	7/246	NT	12.6%	coding (1590/1668 nt)	PP_5263	GGDEF domain‑containing protein
	?	NC_002947	6009287 =	62 (1.210)					coding (1566/1668 nt)	PP_5263	GGDEF domain‑containing protein

GGAAATGCGCGAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCCTGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6009416‑6009263 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggtcGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACCACCTCGAGGTTGAGGTTGTGCGCCAGGTTGATCATGGCGTGTACCAGCTTGCGGTTCTCTTCGCGCATTTCCATTTCCGCAACAAA  >  NC_002947/6009287‑6009430                                                                                                                                                                                                                                                                                                            GGAAATGCGCGAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCC                                                                                                                                                       >  6:117503/1‑149   AAATGCGCGAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCCTG                                                                                                                                                     >  1:305251/1‑149    AATGCGCGAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACGTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCCTG                                                                                                                                                     <  4:290067/148‑1    AATGCGCGAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCCTGG                                                                                                                                                    <  8:72869/149‑1           GAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTC                                                                                                                                                        <  6:38089/138‑1           GAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTC                                                                                                                                                        >  5:38089/1‑138                                               CTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCC                                                                                                                                                       >  8:116997/1‑103                                               CTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCC                                                                                                                                                       <  7:116997/103‑1                                                                               CGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCCTGGTCGCAGCCAAACCCG                                                                                                                                     >  5:290688/1‑89                                                                               CGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCCTGGTCGCAGCCAAACCCG                                                                                                                                     <  6:290688/89‑1                                                                                                                               CTGCGACCAGGTGCAAGGCTTCCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACCACCTCGAGGTTGAGGTTGTGCGCCAGGTTGATCATGGCGTGTACCAGCTTGCGGTTCTCTTCG                         >  4:315781/1‑149                                                                                                                                TGCGACCAGGTGCAAGGCTTCCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACCACCTCGAGGTTGAGGTTGTGCGACAGGTTGATCATGGCGTGTACCAGCTTGCGGTTCTCTTCGC                        >  4:25660/1‑149                                                                                                                                TGCGACCAGGTGCAAGGCTTCCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACCACCTCGAGGTTGAG                                                                          <  4:257757/99‑1                                                                                                                                TGCGACCAGGTGCAAGGCTTCCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACCACCTCGAGGTTGAG                                                                          >  3:257757/1‑99                                                                                                                                TGCGACCAGGTGCAAGGCTTCCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACC                                                                                        <  4:675/85‑1                                                                                                                                TGCGACCAGGTGCAAGGCTTCCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACC                                                                                        >  3:675/1‑85                                                                                                                                         GTGCAAGGCTTCCTGGTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACCACCTCGAGGTTGAGGTTGTGCGCCAGGTTGATCATGGCGTGTACCAGCTTGCGGTTCTCTTCGCGCATTTCCA               <  3:315781/149‑1                                                                                                                                                        GTCGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACCACCTCGAGGTTGAGGTTGTGCGCCAGGTTGATCATGGCGTGTACCAGCTTGCGGTTCTCTTCGCGCATTTCCATTTCCGCAACAAA  <  7:72869/147‑1                                                                                                                                                                                                                                                                                                            GGAAATGCGCGAAGAGAACCGCAAGCTGGTACACGCCATGATCAACCTGGCGCACAACCTCAACCTCGAGGTGGTGGCCGAGGGTGTGGAGAGTGAAGAGCAGCTGACGTTGTTGCGCGGGTTTGGCTGCGACCAGGTGCAAGGCTTCCTGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6009416‑6009263 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggtcGCAGCCAAACCCGCGCAACAACGTCAGCTGCTCTTCACTCTCCACACCCTCGGCCACCACCTCGAGGTTGAGGTTGTGCGCCAGGTTGATCATGGCGTGTACCAGCTTGCGGTTCTCTTCGCGCATTTCCATTTCCGCAACAAA  >  NC_002947/6009287‑6009430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.