New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 401302 = | 17 (0.310) | 6 (0.110) | 5/252 | NT | 12.1% | coding (888/1059 nt) | PP_0334 | transposase |
? | NC_002947 | 3968961 = | 71 (1.350) | coding (1089/1179 nt) | PP_3498 | transposase |
TCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAA > NC_002947/401156‑401449 | atgttcactagcaggggttggagcgcctagcgccccggtggcattacccggttggtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCGa < 7:246733‑M1/3‑1 (MQ=255) ttcactagcaggggttggagcgcctagcgccccggtggcattacccggttggtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCGAt < 1:78000‑M1/4‑1 (MQ=255) actagcaggggttggagcgcctagcgccccggtggcattacccggttggtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCg < 1:325685‑M1/2‑1 (MQ=255) actagcaggggttggagcgcctagcgccccggtggcattacccggttggtcagaggctcatagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCg > 2:325685‑M1/141‑142 (MQ=255) atagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccagataatccgcagattcCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCa > 3:181484‑M1/82‑149 (MQ=255) ggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATc > 2:197929‑M1/70‑149 (MQ=255) tttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTaa > 5:129670‑M1/68‑145 (MQ=255) tttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTaa < 6:129670‑M1/78‑1 (MQ=255) gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTggg > 6:73426/1‑149 (MQ=32) gatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGccc > 5:26950/1‑149 (MQ=32) tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCACGCCTTGGGCGCAAGGAGGCGGAGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTg > 4:84829/1‑149 (MQ=17) ccAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGt > 7:301413/1‑149 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTa < 5:73426/149‑1 (MQ=32) atcgctctgtaacagggcccatataatccgcagatttCGATTAGCCAGCCTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAggcggc < 5:231631‑M1/64‑1 (MQ=255) atcgctctgtaacagggcccatataatccgcagatttCGATTAGCCAGCCTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAggcggc > 6:231631‑M1/38‑101 (MQ=255) gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGc > 5:202172/1‑148 (MQ=32) cATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGa > 7:191756/1‑149 (MQ=32) gTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTTGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGt < 3:84829/149‑1 (MQ=17) ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTa > 8:78260/1‑149 (MQ=32) gAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGttt < 6:26950/146‑1 (MQ=32) gAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTAc < 6:139517/148‑1 (MQ=32) ccAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc > 8:204233/1‑149 (MQ=32) gCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGc > 2:184066/1‑148 (MQ=32) tAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCaaa > 8:237144/1‑149 (MQ=32) aGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAAcc < 6:202172/149‑1 (MQ=32) ccTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCGAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaa > 3:210099/1‑149 (MQ=17) cTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCGTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaac < 1:248338/149‑1 (MQ=17) CGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaaaa > 7:204233‑M1/1‑148 (MQ=255) | TCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAA > NC_002947/401156‑401449 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |