New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2472339 =	38 (0.700)	4 (0.080)	4/246	NT	9.2%	coding (1757/1851 nt)	PP_2167	PhoD‑like phosphatase
	?	NC_002947	2472389 =	43 (0.840)					coding (1707/1851 nt)	PP_2167	PhoD‑like phosphatase

GAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACAT  >  NC_002947/2472191‑2472483                                                                                                                                                     |                                                                                                                                                 gAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTC                                                                                                                                                  <  7:195743‑M1/149‑1 (MQ=255)  tggcaggtgaccagcagcggaatcaagaacgagttcccccggcgcttgctggatgtgctcgaccggctcaaccgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgc                                                                                                                                                  >  4:261913‑M1/148‑148 (MQ=255)  aGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCC                                                                                                                                                 <  2:169540‑M1/149‑1 (MQ=255)    gcaggtgaccagcagcggaatcaagaacgagttcccccggcgcttgctggatgtgctcgaccggctcaaccgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgccc                                                                                                                                                >  2:173566‑M1/146‑148 (MQ=255)               gcgAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCa                                                                                                                                    >  8:300228/1‑149 (MQ=255)                       tccgGCACAGGCTGTAAAAACTCTGAATCTCACTAAGCCCGTTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTC                                                                                                                                                  <  2:49256‑M1/126‑1 (MQ=255)                       gCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTC                                                                                                                                                  >  1:49256‑M1/1‑127 (MQ=255)                        tcaagaacgagttcccccggcgcttgctggatgtgctcgaccggctcaaccgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCa                                                                                                                                               <  2:168597‑M1/4‑1 (MQ=255)                        tcaagaacgagttcccccggcgcttgctggatgtgctcgaccggctcaaccgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCa                                                                                                                                               >  1:168597‑M1/126‑129 (MQ=255)                                     tAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGc                                                                                                                <  8:101145/147‑1 (MQ=255)                                     tAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCt                                                                                                              >  3:101053/1‑149 (MQ=255)                                           ctctGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCtgt                                                                                                        <  2:240577/149‑1 (MQ=255)                                              tGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCATCAACCCCGCCAGCATCCAGCTGGTACACACGCGCCGGTCGCCCCTGTTCATAAAAAAACACCTGTCCAAGACCGGCACCATTCCACAGCCGTTACACGGCCTTGATGTggc                                                                                                     <  7:299269‑M2/149‑4 (MQ=255)                                                aaTCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGTCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTgg                                                                                                      >  3:270909‑M2/1‑144 (MQ=255)                                                aaTCTCACTACGCCCGGGTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCTGCACCATTCCTCTGCCGTTCCCCCGCCTTGCTGTgg                                                                                                      >  2:331394‑M2/1‑144 (MQ=255)                                                   ctcACTACGCCCGGTTTTTAAACGCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAACACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                <  3:229798/149‑1 (MQ=255)                                                      aCTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCacagcaaggccggggaacggctgtggaatggtgccgggctgggacag                                                                                             <  8:173754‑M1/149‑48 (MQ=255)                                                      aCTACGCCCGGTTTTTAAACTCTGTAGAATCACCCCCGCCAGCATCCACCAGGTACACCCGCGCCGGCCGCCCCTGATCATCAAAAAACACCTTTCCCACCCCGGCACCATTACACAGCCGATCCCCGGCCATGCTGTGGCTGGGCGTa                                                                                             >  2:119271/1‑149 (MQ=255)                                                       cTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTAc                                                                                            >  1:101041/1‑149 (MQ=255)                                                             ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                      >  8:7442/1‑149 (MQ=255)                                                             ccGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                      >  1:174500/1‑149 (MQ=255)                                                             ccGGTTTTTAAACTCTGTAGCCTCACCACCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGca                                                                                      >  6:235395/1‑149 (MQ=255)                                                                   tttAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTTGGCGTACGCGGcac                                                                                     <  1:27692/144‑1 (MQ=255)                                                                   tttAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcac                                                                                     >  2:27692/1‑144 (MQ=255)                                                                     tAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCacagcaaggccggggaacggctgtggaatggtgccgggctgggac                                                                                               >  2:50887‑M1/1‑87 (MQ=255)                                                                     tAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCacagcaaggccggggaacggctgtggaatggtgccgggctgggac                                                                                               <  1:50887‑M1/132‑46 (MQ=255)                                                                         ctctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGTCGCCCCTGTTCATCAAAAAACCCCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCAttt                                                                          <  8:299269/149‑1 (MQ=255)                                                                          cgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTggg                                                                                                 >  3:182214‑M1/76‑125 (MQ=255)                                                                          cgctggttgtatgcaccgcgctcgccgctcaactggtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTggg                                                                                                 <  4:182214‑M1/50‑1 (MQ=255)                                                                           ctGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTtct                                                                        <  7:300228/149‑1 (MQ=255)                                                                                 ccTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGgcgc                                                                  >  3:259547/1‑149 (MQ=255)                                                                                     aCCCCCTCCAGCATCCAGCTTGTAAACACGAGCAGGCCGCAGATGATAATCAAAAACCACCTGTCCCAGCCCGGCACCATTACACAGCCGTTCCCAGGCCTTTCTGTGGATTGGCGTAAGCGGAACCACCTAAATTTCTCGGAGATTgg                                                              <  8:316845/149‑1 (MQ=255)                                                                                       ccccGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGt                                                             >  1:174058/1‑148 (MQ=255)                                                                                             cAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTTGTAAACCAg                                                      >  1:119540/1‑149 (MQ=255)                                                                                               gCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGtt                                                    <  2:101041/149‑1 (MQ=255)                                                                                                  tCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAg                                                 <  2:174058/149‑1 (MQ=255)                                                                                                          gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                           <  5:235395/147‑1 (MQ=255)                                                                                                          gTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGAGGCACCACCTCCAATTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAgc                                         >  5:102069/1‑149 (MQ=255)                                                                                                             gtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                <  3:313957‑M1/51‑1 (MQ=255)                                                                                                             gtttaccaagcgccgagaaatggaggtggtgccgcgtacgCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGc                                                                                                >  4:313957‑M1/41‑91 (MQ=255)                                                                                                                        gccgccCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAAc                           <  7:7442/149‑1 (MQ=255)                                                                                                                           gccCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAg                        <  4:259547/149‑1 (MQ=255)                                                                                                                             cccTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCg                      >  5:60723/1‑149 (MQ=255)                                                                                                                             cccTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCg                      >  8:123799/1‑149 (MQ=255)                                                                                                                                 gTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcaccac                                                                                  >  8:57218/1‑85 (MQ=255)                                                                                                                                 gTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGcaccac                                                                                  <  7:57218/85‑1 (MQ=255)                                                                                                                                  ttCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGtt                   <  6:60723/147‑1 (MQ=255)                                                                                                                                  ttCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGtt                   <  2:119540/147‑1 (MQ=255)                                                                                                                                     atcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGc               <  2:174500/148‑1 (MQ=255)                                                                                                                                      tcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTATCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                           >  5:252857/1‑119 (MQ=255)                                                                                                                                      tcaAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACAACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGa                                           <  6:252857/119‑1 (MQ=255)                                                                                                                                       caAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGa                 >  5:49584/1‑144 (MQ=255)                                                                                                                                       caAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGa                 <  6:49584/144‑1 (MQ=255)                                                                                                                                        aaaaaaCACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGt           >  5:41427/1‑149 (MQ=255)                                                                                                                                          aaaaCACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTc          >  7:168362/1‑148 (MQ=255)                                                                                                                                               acCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGca     >  1:277829/1‑148 (MQ=255)                                                                                                                                                 cTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagt  <  8:173754‑M2/149‑103 (MQ=255)                                                                                                                                                   gTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagttta                 >  2:50887‑M2/1‑45 (MQ=255)                                                                                                                                                   gTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagttta                 <  1:50887‑M2/132‑88 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCCGTTCCCCGGCCTTGCTGTGGCTGGGCGTACGCGGCACCACCTCCATTTCTCGGCGCTTGGTAAACCAGTTGAGCGGCGAGCGCGGTGCATACAACCAGCGGTTGAGCCGGTCGAGCACAT  >  NC_002947/2472191‑2472483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.