New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3612448 =	43 (0.800)	4 (0.080)	4/254	NT	9.1%	coding (1236/3396 nt)	mcoA	Mn(II) copper oxidase A
	?	NC_002947	3612488 =	38 (0.720)					coding (1196/3396 nt)	mcoA	Mn(II) copper oxidase A

GGGCGCTGTAGTAGTTCATCATCACGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCGGGGAAGAAGT  >  NC_002947/3612300‑3612593                                                                                                                                                     |                                                                                                                                                  gggCGCTGTAGTAGTTCATCATCACGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAgg                                                                                                                                                   <  5:225279/149‑1 (MQ=255)     gcTGTAGTAGTTCATCATCACGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCg                                                                                                                                               <  4:52565/149‑1 (MQ=255)           gtagtTCATCATCACGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAAc                                                                                                                                         >  5:195141/1‑149 (MQ=255)               ttCATCATCACGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATc                                                                                                                                     <  2:205324/149‑1 (MQ=255)                 catcatcaCGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATGGt                                                                                                                                   >  8:179077/1‑149 (MQ=255)                  gaaagcgacggctttgccaacgcgtacttcttccccggccagtactacgactaccgctggccggtgcagctggccggctacgacaccatcaacacccgtgcccaggacccgcgtgccgctttcccctgctcGCCCGGTGAACCATCGtt                                                                                                                                  <  2:51544‑M1/18‑1 (MQ=255)                  atcatcaCGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGtt                                                                                                                                  <  6:195141/149‑1 (MQ=255)                     atcaCGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTTGTCGTGGAACCAGTGGTTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGa                                                                                                                                <  5:225308/148‑1 (MQ=255)                     atcaCGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGATCCAGTGGGTACTCTTGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGa                                                                                                                                <  1:112730/148‑1 (MQ=255)                     atcaCGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGa                                                                                                                                <  3:92456/148‑1 (MQ=255)                     atcaCGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGa                                                                                                                                <  5:201288/148‑1 (MQ=255)                     atcaCGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGAc                                                                                                                               >  7:280545/1‑149 (MQ=255)                                  cTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCa                                                                                                                  >  5:39011/1‑149 (MQ=255)                                     tGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCAcc                                                                                                                <  7:179077/148‑1 (MQ=255)                                          tacttcttccccggccagtactacgactaccgctggccggtgcagctggccggctacgacaccatcaacacccgtgcccaggacccgcgtgccgctttcccctgctcGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGa                                                                                                          >  1:51544‑M1/108‑149 (MQ=255)                                          aCGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAgg                                                                                                                       >  1:172632/1‑136 (MQ=255)                                          aCGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAgg                                                                                                                       <  2:172632/136‑1 (MQ=255)                                          aCGTTCTGCGCCGTGAAATCCATCACGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGt                                                                                                                      <  2:94068/137‑1 (MQ=255)                                          aCGTTCTGCGCCGTGAAATCCATCACGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGt                                                                                                                      >  1:94068/1‑137 (MQ=255)                                            cttcttccccggccagtactacgactaccgctggccggtgcagctggccggctacgacaccatcaacacccgtgcccaggacccgcgtgccgctttcccctgctcGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAg                                                                                                         >  5:280115‑M1/106‑148 (MQ=255)                                               cttccccggccagtactacgactaccgctggccggtgcagctggccggctacgacaccatcaacacccgtgcccaggacccgcgtgccgctttcccctgctcGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCa                                                                                                       >  1:126669‑M1/103‑147 (MQ=255)                                                  cgcCTTGAAATACATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTATCGCTCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAgg                                                                                                     <  7:309134/146‑1 (MQ=255)                                                       tGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCg                                                                                             >  3:41107/1‑149 (MQ=255)                                                                   tgtgGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTcc                                                                                 >  1:303840/1‑149 (MQ=255)                                                                     tgGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTg                                                                               >  4:97982/1‑149 (MQ=255)                                                                          gTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCAc                                                                          >  2:44939/1‑149 (MQ=255)                                                                           tGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACg                                                                         <  3:97982/149‑1 (MQ=255)                                                                                    tGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGAt                                                                <  6:190501/149‑1 (MQ=255)                                                                                    tGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGAt                                                                <  6:39011/149‑1 (MQ=255)                                                                                        tACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGgtg                                                            <  2:303840/149‑1 (MQ=255)                                                                                           tCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGAt                                                                >  5:153789/1‑142 (MQ=255)                                                                                           tCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGAt                                                                <  6:153789/142‑1 (MQ=255)                                                                                             aTGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCg                                                         >  8:223755/1‑147 (MQ=255)                                                                                             aTGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCg                                                         >  1:155047/1‑147 (MQ=255)                                                                                              tGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCAACCGGCGAGCAGGGGAAAGCGGCCCGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAg                                                      >  7:30171/1‑149 (MQ=255)                                                                                               ggTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGgt                                                                      <  8:30933/132‑1 (MQ=255)                                                                                               ggTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGgt                                                                      >  7:30933/1‑132 (MQ=255)                                                                                                       gcCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGc                                             >  8:189425/1‑149 (MQ=255)                                                                                                            acGCCACGAATCTTGATCCTGCCGTTCTCGCAGGTATTCAGGCCCGGTGAACCATCGTTGAAGAACAAGGTTTAACACGGCGAGAAGGCGAAAGCGGCCCGCCGGTCGGGGGCACGGGTGTTGATGGTGGCGTAGCCGGCCAGCTGCAc                                        >  2:77982/2‑149 (MQ=255)                                                                                                                  cGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGc                                    >  2:39566/1‑147 (MQ=255)                                                                                                                        ttGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCgg                              >  6:181886/1‑147 (MQ=255)                                                                                                                          gATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTa                            <  2:155047/147‑1 (MQ=255)                                                                                                                             gctgcCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCg                        >  6:297128/1‑148 (MQ=255)                                                                                                                              ctgcCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATg                                                               >  6:283775/1‑108 (MQ=255)                                                                                                                              ctgcCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATg                                                               <  5:283775/108‑1 (MQ=255)                                                                                                                                   gTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACt                 <  8:280545/149‑1 (MQ=255)                                                                                                                                         gCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCgg           >  2:171133/1‑149 (MQ=255)                                                                                                                                         gCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCgg           >  3:72146/1‑149 (MQ=255)                                                                                                                                           aGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCgggg         <  5:181886/149‑1 (MQ=255)                                                                                                                                                   aGGCCCGGTCAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCGGGGAAGAAGt  <  7:223755/148‑1 (MQ=255)                                                                                                                                                     GCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCgtag                     >  6:309828‑M1/1‑127 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GGGCGCTGTAGTAGTTCATCATCACGGCGTTGCCTTTGTAGACGTTCTGCGCCGTGAAATCCATCATGTGGTCGTGGAACCAGTGGGTACTCATGGTTTCGCGCCAGTCGCCACGAATCTTGATGCTGCCGTTCTCGCAGGTTTTCAGGCCCGGTGAACCATCGTTGACGAACAAGGTTTCACCCGGCGAGCAGGGGAAAGCGGCACGCGGGTCCTGGGCACGGGTGTTGATGGTGTCGTAGCCGGCCAGCTGCACCGGCCAGCGGTAGTCGTAGTACTGGCCGGGGAAGAAGT  >  NC_002947/3612300‑3612593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.