New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3904713 =	45 (0.830)	3 (0.060)	3/248	NT	6.7%	coding (30/1593 nt)	ilvA‑I	threonine deaminase
	?	NC_002947	3904749 =	41 (0.800)					intergenic (‑7/+4)	ilvA‑I/PP_mr42	threonine deaminase/P9 ncRNA

CCAGGGCGGCAGACAAGGCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCAT  >  NC_002947/3904565‑3904856                                                                                                                                                     |                                                                                                                                                ccAGGGCGGCAGACAAGGCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGAt                                                                                                                                                 >  3:255474/1‑149 (MQ=255)  ttgactttcggctgcgaggcaggctaagttcctaccccaatgaatacattcccgcacgtgaacgccattattattaccgccattatcagcttggcgggctagcgcgtacgtgcaccgaacccgccctggaggcgggttttttctctct                                                                                                                                                 <  2:117151‑M1/1‑1 (MQ=255)      ctttcggctgcgaggcaggctaagttcctaccccaatgaatacattcccgcacgtgaacgccattattattaccgccattatcagcttggcgggctagcgcgtacgtgcaccgaacccgccctggaggcgggttttttctctcTGACTc                                                                                                                                            <  4:302734‑M1/6‑1 (MQ=255)        ggcAGACAAGGCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGAt                                                                                                                                                 >  8:283512/1‑142 (MQ=255)        ggcAGACAAGGCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGAt                                                                                                                                                 <  7:283512/142‑1 (MQ=255)        ggcAGACAAGGCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCt                                                                                                                                          >  2:54799/1‑149 (MQ=255)          cAGACAAGGCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTg                                                                                                                                        <  5:54980/149‑1 (MQ=255)          cAGACAAGGCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTg                                                                                                                                        >  1:96474/1‑149 (MQ=255)                 ggCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTAttt                                                                                                                                 >  7:12271/1‑149 (MQ=255)                     ggggCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTAc                                                                                                                             <  8:12271/149‑1 (MQ=255)                            cTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGccc                                                                                                                      <  2:61218/149‑1 (MQ=255)                                cAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAaga                                                                                                                  <  1:54799/149‑1 (MQ=255)                                  ggggCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTAc                                                                                                                             <  1:217813/136‑1 (MQ=255)                                  ggggCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTAc                                                                                                                             >  2:217813/1‑136 (MQ=255)                                      ccaatgaatacattcccgcacgtgaacgccattattattaccgccattatcagcttggcgggctagcgcgtacgtgcaccgaacccgccctggaggcgggttttttctctcTGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCaga                                                                                                            >  3:302734‑M1/112‑149 (MQ=255)                                                gCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGaaaaaa                                                                                                   <  5:112325/148‑1 (MQ=255)                                                gCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAAc                                                                                                  >  6:127336/1‑149 (MQ=255)                                                 attcccgcacgtgaacgccattattattaccgccattatcagcttggcgggctagcgcgtacgtgcaccgaacccgccctggaggcgggttttttctctcTGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCagaga                                                                                                          >  6:311116‑M1/101‑140 (MQ=255)                                                 attcccgcacgtgaacgccattattattaccgccattatcagcttggcgggctagcgcgtacgtgcaccgaacccgccctggaggcgggttttttctctcTGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCagaga                                                                                                          <  5:311116‑M1/40‑1 (MQ=255)                                                  cAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGaaa                                                                                                      <  6:160775/143‑1 (MQ=255)                                                  cAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGaaa                                                                                                      >  5:160775/1‑143 (MQ=255)                                                  cAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAAccc                                                                                                <  5:245263/149‑1 (MQ=255)                                                    ggTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGc                                                                                              >  6:205377/1‑149 (MQ=255)                                                         tACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTc                                                                                           >  1:55640/1‑147 (MQ=255)                                                         tACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTc                                                                                           >  1:50644/1‑147 (MQ=255)                                                          acacCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAg                                                                                        >  7:113151/1‑149 (MQ=255)                                                           cacCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAgg                                                                                       >  2:287229/1‑149 (MQ=255)                                                            acCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGccctggagg                                                                                      >  3:81409/1‑142 (MQ=255)                                                                gcgcCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCAGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCggg                                                                                  <  1:287229/149‑1 (MQ=255)                                                                       aaGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCgg                                                                             <  4:42845/147‑1 (MQ=255)                                                                       aaGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCgg                                                                             >  3:42845/1‑147 (MQ=255)                                                                        aGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGc                                                                          <  2:50644/149‑1 (MQ=255)                                                                        aGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGc                                                                          <  2:55640/149‑1 (MQ=255)                                                                                aCGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTAcgc                                                                  >  1:117151/1‑149 (MQ=255)                                                                                        gCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTACAGGGCGGGTTCGGTGCACGTACGCGCTAGccc                                                          >  8:312683/1‑149 (MQ=255)                                                                                         cTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGccc                                                          <  8:113151/148‑1 (MQ=255)                                                                                         cTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCg                                                         <  5:205377/149‑1 (MQ=255)                                                                                            cGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGcc                                                       >  1:94/1‑148 (MQ=255)                                                                                              aCAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGcc                                                       <  8:152761/146‑1 (MQ=255)                                                                                              aCAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGcc                                                       >  7:152761/1‑146 (MQ=255)                                                                                               cagcagTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGc                                                   <  2:96474/149‑1 (MQ=255)                                                                                               cagcagTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGc                                                   <  5:127336/149‑1 (MQ=255)                                                                                                  cagTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGa                                                <  4:255474/149‑1 (MQ=255)                                                                                                              ggTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAACCCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGtaa                                    <  3:218839/149‑1 (MQ=255)                                                                                                                  aCGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGtaataa                                 <  1:316426/148‑1 (MQ=255)                                                                                                                         taCGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTAGGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGc                          >  4:158403/1‑148 (MQ=255)                                                                                                                         taCGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTAAGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGc                          <  3:158403/148‑1 (MQ=255)                                                                                                                          aCGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGt                        >  7:80948/1‑149 (MQ=255)                                                                                                                           cGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATg                                           >  2:343972/1‑129 (MQ=255)                                                                                                                           cGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATg                                           <  1:343972/129‑1 (MQ=255)                                                                                                                            gAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTc                      <  2:94/149‑1 (MQ=255)                                                                                                                              gggACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCAc                    <  8:80948/149‑1 (MQ=255)                                                                                                                                           tGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTa       >  2:141791/1‑149 (MQ=255)                                                                                                                                                aTCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATg                            <  6:198090/123‑1 (MQ=255)                                                                                                                                                aTCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCAt  >  2:6916/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                CCAGGGCGGCAGACAAGGCCGGGGCCGCTTGCAGGGGCGTTTCAATGGCCAGGTCGTACACCGGCGCCGCAAGAATGCGACGCACCTGCTCCGACAGCAGTTGCTGGGGGGTGACGGTAGTACGAGGGACACTGAAGCTGGTCATCGATGACTCCTTGGCTATTTTTACGTTGCCCAAGAGTCAGAGAGAAAAAACCCGCCTCCAGGGCGGGTTCGGTGCACGTACGCGCTAGCCCGCCAAGCTGATAATGGCGGTAATAATAATGGCGTTCACGTGCGGGAATGTATTCAT  >  NC_002947/3904565‑3904856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.