| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4908005 | 29 (0.540) | 7 (0.130) | 5/256 | NT | 19.7% | coding (20/198 nt) | PP_4317 | hypothetical protein |
| ? | NC_002947 | = 4908082 | NA (NA) | intergenic (‑58/‑224) | PP_4317/PP_4318 | hypothetical protein/transposase | |||||
TGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGT > NC_002947/4907872‑4908153 | tgtgCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGAGTTCAGGAGGCCGCACGCAGGCCTTGCGGAGGCAGGTGACgg > 4:54339/1‑149 (MQ=255) tgttgtTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAg > 8:269213/1‑133 (MQ=255) tgttgtTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAg < 7:269213/133‑1 (MQ=255) tgttgtTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATg > 6:143736/1‑149 (MQ=255) gttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCATGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTCGCtcccggcagaaccgcgccgacgcc > 3:8744‑M1/1‑125 (MQ=255) ttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGc < 5:143736/149‑1 (MQ=255) gttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGt > 8:107292/1‑148 (MQ=39) ttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATCCATGCCCGTCa < 5:186234/149‑1 (MQ=255) ctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAgc > 2:14573/1‑149 (MQ=38) ttgccgttgccgttgccgttgccgttgccgTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAgcgc < 7:158585/148‑1 (MQ=37) ccgttgccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGa < 7:107292/148‑1 (MQ=37) ccgttgccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGa < 1:14573/148‑1 (MQ=37) cgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGAGCTTGATCTTGATCTTGATCTGCTCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGGGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATggg < 1:34455/149‑1 (MQ=255) gttgccgttgATCTTTATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTc < 3:200478/148‑1 (MQ=25) gttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTc > 4:200478/1‑148 (MQ=35) ttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCgg > 5:262350/1‑149 (MQ=34) ccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGgcgc > 3:220553/1‑149 (MQ=32) ctggtggtcttgctcttcatcttgatctggatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCCGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCt < 3:203901/142‑1 (MQ=11) gttgatcttgatcttgatcttgatcttgatcttgatcttgatcttcGCGACTTCAGGAGGCCGAACGGAGGCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacct < 8:154347‑M1/147‑72 (MQ=255) cttgatcttgatcttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTCGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctg > 1:290280‑M1/1‑77 (MQ=255) tcttgatcttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctcc > 5:227838‑M1/1‑72 (MQ=255) tcttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAgg > 4:313306/1‑149 (MQ=32) cttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGc > 5:282691/1‑149 (MQ=32) cttgatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTCGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaagg < 2:290280‑M1/148‑84 (MQ=255) gatcttgatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggc < 6:227838‑M1/146‑85 (MQ=255) gatcttgatcttgatcttgatcttgatcttCGCGACTGCAGGAGGCCGAACGCAGGCCTGGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTGCGGCGCGGTCCTGCCGGGAGCGAGGc < 8:221616/146‑1 (MQ=12) gatcttgatcttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGa < 3:313306/148‑1 (MQ=32) ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGAGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGcgcagcgcag > 1:220894/1‑149 (MQ=17) ttCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGcgcagcgcag < 1:259867/141‑1 (MQ=32) ttCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGcgcagcgcag > 2:259867/1‑141 (MQ=32) cAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGTCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGTGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGga < 6:262350/147‑1 (MQ=17) gCCGATCGCAGGCCTGGGGTCGGCAGGTGACGGGCTTTGATGCCCGTCATGCTCTGCGGCCCCAGGATGGGGCGTTGGGCGGGGTCCTGCCGGGAGCGAGGCCGGAGTGTGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGa < 4:220553/149‑1 (MQ=11) cAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCg > 2:16164/1‑149 (MQ=32) aGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATgg > 4:108772/1‑138 (MQ=32) aGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATgg < 3:108772/138‑1 (MQ=32) aGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATgg < 3:103891/138‑1 (MQ=32) aGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATgg > 4:103891/1‑138 (MQ=32) ggCCTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaa < 5:18508‑M1/149‑142 (MQ=255) ccTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaaga < 6:115920‑M1/149‑144 (MQ=255) ccTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaaga > 1:97905‑M1/1‑6 (MQ=255) ccTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaaga < 2:97905‑M1/143‑138 (MQ=255) ccTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatc < 4:277855‑M1/121‑116 (MQ=255) ccTTGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatc > 3:277855‑M1/1‑6 (MQ=255) tGCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacggggatccatgcccgtgacctgcctccgcaaggcctgcgttcggcctgctgaagtggcgaagatcaagatcaagatcaagatcaagatcaagat > 3:1929‑M1/1‑3 (MQ=255) gCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaag < 8:184862‑M1/132‑131 (MQ=255) gCtcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcggtcggcctcctgaagtcgcgaagatccagatcaagagcaagatcaagatccagatc > 7:270493‑M1/1‑2 (MQ=255) ctcccggcaggaccgcgccgaaggccccatcctggggcctcagcgcttgacgggcatccatgcccgtcacctgcctccgcaaggcctgcgttcggcctcctgaagtcgcgaagatcaagatcaagatcaagatcaagatcaagatcaag < 2:74806‑M1/149‑149 (MQ=255) | TGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGT > NC_002947/4907872‑4908153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |