New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652782	59 (1.090)	5 (0.110)	4/220	NT	16.7%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808159	0 (0.000)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

ACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACAC  >  NC_002947/4808011‑4808236                                                                                                                                                     |                                                                              aCAATGTCGCGCGGTGTGTCTAGGTCAATCGGCGGAATGCGCGCTTTGGCGGTTAGGCTTTTGGCGGTAGGTTGTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTgg                                                                               <  7:193492/149‑1 (MQ=37)  cAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGg                                                                              >  6:121860‑M2/1‑148 (MQ=255)     tgtgTCGCGGTGTTGATAGGGCAATCGGCCGATTTCGCGCTTTGGCGCTTAGGGTTTTGGCGGTAGGTTTTCTGGGCCTTGGAGGTGTTCGCCGGTGGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgaga                                                                           <  1:83469/149‑1 (MQ=25)       tggagcggtgtGTATATGGCAATGGTCGGAATGCGCGCTTTGGCGGGTAGGTGTTTGGCGGTAGGTTTTCAGCGGCTGGGAGGTGTTCGCCGGGCGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagat                                                                          >  1:212690‑M2/5‑143 (MQ=255)                      aGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgc                                                          <  3:164402‑M2/149‑22 (MQ=255)                                               ttgctgttaggagttTGGCGGTAGGCGTGGAGGGGCTGGGAGGTGTTGGGCGGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctc                                  >  3:182499‑M2/8‑103 (MQ=255)                                                                        ttttCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattc        >  4:164402‑M2/1‑78 (MQ=255)                                                                        ttttCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaaccagctcctacgtttgtttcgggccaattat          <  7:35772‑M2/147‑70 (MQ=255)                                                                           tCAGCGCCTGGGTGGTGTTCTCCGGGGTATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcct      >  8:35772‑M2/1‑75 (MQ=255)                                                                               cgcgTGGGAGGGGTTCGCCGGGGTTTTTTCAGCGCCTGGGTGGGGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgg  >  1:267197‑M2/1‑71 (MQ=255)                                                                                                                                                     |                                                                              ACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACAC  >  NC_002947/4808011‑4808236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.