New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	882691 =	48 (0.890)	4 (0.080)	4/248	NT	7.9%	coding (294/1365 nt)	PP_0766	hypothetical protein
	?	NC_002947	882778 =	48 (0.930)					coding (381/1365 nt)	PP_0766	hypothetical protein

AAAACCGCTGTTCACCATCACGGCGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGAACCACATCACCCGCTACCG  >  NC_002947/882634‑882924                                                                                                                                                 |                                                                                                                                                   aaaaCCGCTGTTCACCATCACGGCGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGAt                                                                                                                                                 <  8:185118/148‑1 (MQ=255)   aaCCGCTGTTCACCATCACGGCGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGAtgtg                                                                                                                                              <  6:197879/149‑1 (MQ=255)   aaCCGCTGTTCACCATCACGGCGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGAtgtg                                                                                                                                              >  1:236754/1‑149 (MQ=255)      cGCTGTTCACCATCACGGCGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTc                                                                                                                                           <  2:236754/149‑1 (MQ=255)      cGCTGTTCACCATCACGGCGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCAGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTc                                                                                                                                           >  3:102460/1‑149 (MQ=255)                 aTCACGGCGCAAAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCGGATGTGTTCGCTGCCATCaa                                                                                                                                <  4:89975/149‑1 (MQ=255)                 aTCACGACGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCaa                                                                                                                                <  7:289644/149‑1 (MQ=255)                    aCGGCGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAgg                                                                                                                              >  7:306297/1‑148 (MQ=255)                                  cGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCaaaa                                                                                                               <  5:219157/149‑1 (MQ=255)                                      cAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTAc                                                                                                           <  4:184116/149‑1 (MQ=255)                                           cAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATc                                                                                                                                  <  2:48086/121‑1 (MQ=255)                                           cAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCtgg                                                                                                      >  7:280169/1‑149 (MQ=255)                                            aaGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCtggt                                                                                                     >  6:23333/1‑149 (MQ=255)                                            aaGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCtggt                                                                                                     <  8:280169/149‑1 (MQ=255)                                                      tctcGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCTCTGCCATCAAGGAAAACg                                                                                                                        >  4:226990/1‑120 (MQ=255)                                                      tctcGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCTCTGCCATCAAGGAAAACg                                                                                                                        <  3:226990/120‑1 (MQ=255)                                                      tctcGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAggc                                                                                              <  4:183495/146‑1 (MQ=255)                                                      tctcGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAggc                                                                                              >  3:183495/1‑146 (MQ=255)                                                       ctcGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCACCCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCCCCAAAACTACCCTGGTGGAAggcggc                                                                                           >  4:20468/1‑148 (MQ=255)                                                          gccgggacggttgcgccgcgatgggtcttgaacaccgggatcttgtaggtgttcgggtagcgtttgaacatggccagctggcccggcCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACg                                                                                       >  3:149498‑M2/88‑149 (MQ=255)                                                            cgggacggttgcgccgcgatgggtcttgaacaccgggatcttgtaggtgttcgggtagcgtttgaacatggccagctggcccggcCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGc                                                                                     >  5:184099‑M2/86‑149 (MQ=255)                                                                ccAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCGGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGa                                                                                 <  7:228840/149‑1 (MQ=255)                                                                ccAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCt                                                                                   >  6:131384/1‑147 (MQ=255)                                                                ccAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGa                                                                                 <  1:346131/149‑1 (MQ=255)                                                                acggttgcgccgcgatgggtcttgaacaccgggatcttgtaggtgttcgggtagcgtttgaacatggccagctggcccggcCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGa                                                                                 <  6:184099‑M2/68‑1 (MQ=255)                                                                      ggCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACt                                                                           >  8:74727/1‑149 (MQ=255)                                                                       gCCATGTTCAAACGCTCCCCGAACACCTAAAAGCTCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCCATCTGTTCACTCCCATCAACGAAAACGCCACCAAAACTAACCAGGTGGAAGGCGGCAACGGACTGAGCAACtt                                                                          >  6:307632/1‑149 (MQ=255)                                                                            gTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCa                                                                     >  3:179943/1‑149 (MQ=255)                                                                              tCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCAcg                                                                   >  6:47125/1‑149 (MQ=255)                                                                                aaaCGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCAcggc                                                                 >  1:204278/1‑149 (MQ=255)                                                                                           gAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTtcc                                                      >  8:290016/1‑149 (MQ=255)                                                                                           gAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTtcc                                                      <  3:232287/149‑1 (MQ=255)                                                                                             acacCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTtcccg                                                    <  4:179943/149‑1 (MQ=255)                                                                                              cacCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTtcccga                                                   <  7:74727/149‑1 (MQ=255)                                                                                                ccTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTtcccgatc                                                 <  8:306297/149‑1 (MQ=255)                                                                                                   aCAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTtcccgatccc                                               >  2:21422/1‑148 (MQ=255)                                                                                                    cAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTtcccgatcccg                                              >  3:217019/1‑148 (MQ=255)                                                                                                     aaGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGaa                                            <  2:204278/149‑1 (MQ=255)                                                                                                       gATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGtt                                                        <  5:256599/135‑1 (MQ=255)                                                                                                       gATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGtt                                                        >  6:256599/1‑135 (MQ=255)                                                                                                           ccGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCgg                                      <  5:155034/149‑1 (MQ=255)                                                                                                                     aGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGAACACGAAAAGCGGCCTTGAGGt                             >  6:251897/1‑148 (MQ=255)                                                                                                                       aCCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCAcgg                                                                  >  6:42563/1‑109 (MQ=255)                                                                                                                       aCCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCAcgg                                                                  <  5:42563/109‑1 (MQ=255)                                                                                                                       aCCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAg                               >  7:122617/1‑144 (MQ=255)                                                                                                                       aCCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAg                               <  8:122617/144‑1 (MQ=255)                                                                                                                       aCCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGAt                          <  4:102460/149‑1 (MQ=255)                                                                                                                          tgaacatggccagctggcccggcCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCt                        <  4:149498‑M2/125‑1 (MQ=255)                                                                                                                           aTCGCGGCGCAACCGTCCGGGACGATGTGTTCGCTGCCATCAAGGAAAACGCCACCATATCTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTTATCTgg                      <  5:307632/149‑1 (MQ=255)                                                                                                                            tCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGa                     <  5:131384/149‑1 (MQ=255)                                                                                                                              gcggcgCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGAAc                   <  7:290016/149‑1 (MQ=255)                                                                                                                              gcggcgCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGAAc                   <  3:187879/149‑1 (MQ=255)                                                                                                                               cggcgCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGAAcc                  <  5:23333/149‑1 (MQ=255)                                                                                                                                        cGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCAGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGAACCACATCAccc         <  1:282961/149‑1 (MQ=255)                                                                                                                                           cccggcCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGAACCACATCACCCGc       >  1:120934‑M2/7‑148 (MQ=255)                                                                                                                                               gcCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGAACCACATCACCCGCTACcg  <  5:47125‑M2/147‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   AAAACCGCTGTTCACCATCACGGCGCAGAATGCCGACCAGTACAAGGACAAGCTCTCGCCGGGCCAGCTGGCCATGTTCAAACGCTACCCGAACACCTACAAGATCCCGGTGTTCAAGACCCATCGCGGCGCAACCGTCCCGGCCGATGTGTTCGCTGCCATCAAGGAAAACGCCACCAAAACTACCCTGGTGGAAGGCGGCAACGGCCTGAGCAACTTCCGCACGGCGGTGCCGTTCCCGATCCCGAAAAGCGGCCTTGAGGTGATCTGGAACCACATCACCCGCTACCG  >  NC_002947/882634‑882924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.