New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1092152	59 (1.090)	3 (0.060)	3/246	NT	5.3%	coding (535/909 nt)	PP_0947	membrane protein
	?	NC_002947	= 1092194	52 (1.020)					coding (577/909 nt)	PP_0947	membrane protein

CGCCGGAAGCGCTGGTGGGCACGGCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGCCTCAGGCTTGGTCGAGCCGCTGGCGGCGTTGAT  >  NC_002947/1092048‑1092333                                                                                                                                                   |                                                                                                                                            cGCCGGAAGCGCTGGTGGGCACGGCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCt                                                                                                                                            >  4:298907‑M2/1‑147 (MQ=255)     ggAAGCGCTGGTGGGCACGGCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCtggcca                                                                                                                                       <  6:181569‑M2/149‑7 (MQ=255)        aGCGCTGGTGGGCACGGCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATgg                                                                                                                                    <  5:57264/149‑1 (MQ=255)          cgcTGGTGGGCACGGCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATggg                                                                                                                                   >  7:24926/1‑148 (MQ=255)               gtggGCACGGCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGc                                                                                                                             <  5:107377/149‑1 (MQ=255)                   gCACGGCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTg                                                                                                                         >  4:292588/1‑149 (MQ=255)                       ggCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAg                                                                                                                      >  6:114023/1‑148 (MQ=255)                             ccaaccGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGc                                                                                                               <  7:323716/149‑1 (MQ=255)                             ccaaccGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGc                                                                                                               <  3:323228/149‑1 (MQ=255)                             ccaaccGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGc                                                                                                               <  7:323723/149‑1 (MQ=255)                             ccaaccGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCG‑AGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGcc                                                                                                              >  7:11060/1‑149 (MQ=255)                                accGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCt                                                                                                             >  3:97229/1‑148 (MQ=255)                                     tGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAgggg                                                                                                       <  7:319857/149‑1 (MQ=255)                                          gccgcgcgcATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTgg                                                                                                   <  6:83031/145‑1 (MQ=255)                                              cgcgcATCTGGCGGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATCGCCATTGGTGTGTCGGCGGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATc                                                                                              <  8:125437/149‑1 (MQ=255)                                                   aTCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCt                                                                                         >  2:282472/1‑149 (MQ=255)                                                      tGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGt                                                                                      >  3:55111/1‑149 (MQ=255)                                                       ggCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTg                                                                                                    <  5:344801/134‑1 (MQ=255)                                                       ggCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTg                                                                                                    >  6:344801/1‑134 (MQ=255)                                                         cTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCa                                                                                                                       >  1:100148/1‑113 (MQ=255)                                                         cTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCa                                                                                                                       <  2:100148/113‑1 (MQ=255)                                                            ttCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTgg                                                                                 >  1:278908/1‑148 (MQ=255)                                                            ttCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTg                                                                                  <  5:181569/147‑1 (MQ=255)                                                               gTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAgg                                                                             >  6:209555/1‑149 (MQ=255)                                                                     gCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGgggcgg                                                                        <  3:217989/148‑1 (MQ=255)                                                                              gCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCcgcg                                                              >  3:25563/1‑149 (MQ=255)                                                                                ccACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGcc                                                                 <  2:277289/144‑1 (MQ=255)                                                                                ccACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGcc                                                                 >  1:277289/1‑144 (MQ=255)                                                                                ccACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCt                                                            >  1:133928/1‑149 (MQ=255)                                                                                 cacaACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCt                                                            >  6:29407/1‑148 (MQ=255)                                                                                  acaacaTCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTc                                                          <  2:249478/149‑1 (MQ=255)                                                                                  acaacaTCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGAATGCCGCGCtt                                                           >  4:173209/1‑148 (MQ=255)                                                                                       aTCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGc                                                     >  7:3284/1‑149 (MQ=255)                                                                                       aTCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGc                                                     <  2:278908/149‑1 (MQ=255)                                                                                          cccGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCt                                                   <  3:292588/148‑1 (MQ=255)                                                                                           ccGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGgggcgg                                                                        >  4:15752/1‑126 (MQ=255)                                                                                           ccGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGgggcgg                                                                        <  3:15752/126‑1 (MQ=255)                                                                                           ccGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTc                                                 >  3:85519/1‑149 (MQ=255)                                                                                           ccGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTc                                                 >  2:111010/1‑149 (MQ=255)                                                                                              aaGGTATGGCCATTGGTGTGGCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTg                                              <  5:114023/149‑1 (MQ=255)                                                                                                ggTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCtggccataccttcggggatgttgtgggcaatgatggcaatcacgaacagccagatgcgcgctgcaatcaccggttggtttgccgtgcccaccagcgc                                            <  1:149269‑M2/149‑98 (MQ=255)                                                                                                  tATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCtggccataccttcggggatgttgtgggcaatgatggcaatcacgaacagccagatgcgcgctgcaatcaccggttggtttgccgtgcccaccagcgctt                                          <  7:57728‑M2/149‑100 (MQ=255)                                                                                                   aTGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCa                                                                               <  7:281146/111‑1 (MQ=255)                                                                                                   aTGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCa                                                                               >  8:281146/1‑111 (MQ=255)                                                                                                    tGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCtggccataccttcggggatgttgtgggcaatgatggcaatcacgaacagccagatgcgcgctgcaatcaccggttggtttgccgtgcccaccagcgcttc                                         >  2:149269‑M2/1‑48 (MQ=255)                                                                                                    tGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGgc                                        <  5:29407/149‑1 (MQ=255)                                                                                                     ggCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCtt                                                                                                                          <  6:257454/66‑1 (MQ=255)                                                                                                     ggCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCtt                                                                                                                          >  5:257454/1‑66 (MQ=255)                                                                                                         aTTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGc                                   <  4:25563/149‑1 (MQ=255)                                                                                                               gtgtCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGCCTCAgg                             >  3:131015/1‑149 (MQ=255)                                                                                                                 gtCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGCCTCAGGCt                           >  3:132015/1‑149 (MQ=255)                                                                                                                 gtCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCATGAGGGGCTGGTGATCGCGCTGGTGCTGCAAGTGGCGGTCATGCCGCGCTTCAAGTCCTTCCAGATCGACGCAGCCTCAGGCt                           >  8:277172/1‑149 (MQ=255)                                                                                                                    ggCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGCCTCAGGCTTg                         <  4:55111/148‑1 (MQ=255)                                                                                                                    ggCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGCCTCAGGCTTg                         <  8:11060/148‑1 (MQ=255)                                                                                                                          gggTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCGTGATCGGCGCAGCCTCAGGCTTGGTCGAGc                  <  4:132015/149‑1 (MQ=255)                                                                                                                                cATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTgg                                                                                       <  6:290756/74‑1 (MQ=255)                                                                                                                                cATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTgg                                                                                       >  5:290756/1‑74 (MQ=255)                                                                                                                                       gacgccgacAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGCCTCAGGCTTGGTCGAGCCGCTGGCGGCGtt     <  4:85519/149‑1 (MQ=255)                                                                                                                                          gccgacAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGCCTCAGGCTTGGTCGAGCCGCTGGCGGCGTTGAt  <  4:97229/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                            CGCCGGAAGCGCTGGTGGGCACGGCAAACCAACCGGTGATTGCAGCGCGCATCTGGCTGTTCGTGATTGCCATCATTGCCCACAACATCCCCGAAGGTATGGCCATTGGTGTGTCGGCCGGGGGTGGCATGGCCGACGCCGACAGCCTGGCCATGGGCATTGCCTTGCAGGATGTGCCTGAGGGGCTGGTGATCGCGCTGGTGCTGGCAGGGGCGGGCATGCCGCGCTTCAAGGCCTTCCTGATCGGCGCAGCCTCAGGCTTGGTCGAGCCGCTGGCGGCGTTGAT  >  NC_002947/1092048‑1092333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.