| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1149926 | 65 (1.200) | 9 (0.170) +C |
6/258 | NT | 14.5% | intergenic (‑173/+84) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
| ? | NC_002947 | 2071168 = | 42 (0.780) | intergenic (+120/+107) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor | |||||
CGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAC > NC_002947/2071020‑2071309 | cGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGc < 3:217103/149‑1 (MQ=255) gATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCt > 6:188088/1‑149 (MQ=255) gATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCt > 6:309881/1‑149 (MQ=255) aaCCGGCTTAGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGc < 3:276402/148‑1 (MQ=255) tgcttatcatccgtgcggcaggtcaagtgtggaattatcaggaaaaggtaaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgatccctgggggagcggcCTTGCCcg > 1:146647‑M2/142‑149 (MQ=255) ggCTTAGCCGCGTAACCTGAACCGCCGTGTGACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGATGCTGTGCAGCCCATCGCGAAACAACCGGGCTTGCCcgc > 1:205792/1‑149 (MQ=21) cTTAGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGa > 1:35893/1‑148 (MQ=255) cTTAGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGa < 2:35893/148‑1 (MQ=255) aGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGc < 4:65776/148‑1 (MQ=255) aGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGc < 5:23047/148‑1 (MQ=255) atccgtgcggcaggtcaagtgtggaattatcaggaaaaggtaaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgatccctgggggagcggcCTTGCCCGCGAAGCCa < 2:146647‑M2/16‑1 (MQ=255) gcgTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAaca < 6:190698/149‑1 (MQ=255) ccgccgTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATg > 3:36874/1‑149 (MQ=255) aagtgtggaattatcaggaaaaggtaaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgacccgtgtgggagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATgg > 5:333988‑M2/118‑149 (MQ=255) gtgt‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACg < 5:14237/149‑1 (MQ=255) gt‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACggg > 6:277257/1‑149 (MQ=255) ggAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑c > 1:121234/1‑149 (MQ=255) tcaggaaaaggtaaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgatccctgggggagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGcc > 7:28972‑M2/105‑149 (MQ=255) ccGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGccc < 5:309881/149‑1 (MQ=255) aggaaaaggtaaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgacccgtgtgggagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCg > 6:2420‑M2/103‑149 (MQ=255) aCGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTcgc > 4:217911/1‑149 (MQ=255) taaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgatccctgggggagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCgg < 8:28972‑M2/56‑1 (MQ=255) taaagattgtagtcactggatgccgtttgctttttttgggagcaactgtcttgctcaatttctaaaagctggcgcgacccgtgtgggagcggcCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCgg < 6:333988‑M2/56‑1 (MQ=255) ggtggtGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCgg < 3:217911/149‑1 (MQ=255) tgAGAGGCCGCCGTGTGTCAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGcc < 1:174938/149‑1 (MQ=255) aCGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTccc < 5:188088/149‑1 (MQ=255) cggcggGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCca < 5:75811/149‑1 (MQ=255) tgtgAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTc > 7:199668/1‑123 (MQ=255) tgtgAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTc < 8:199668/123‑1 (MQ=255) gAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTcgcg > 1:152448/1‑148 (MQ=255) aaTCCGCCTCCTACTTGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGa > 7:59904/1‑148 (MQ=255) aTCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGa > 2:175043/1‑147 (MQ=255) tttgggagcaactgtcttgctcaatttctaaaagctggcgcgatccctgggggagcgggCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTcgc < 2:304809‑M2/54‑1 (MQ=255) tttgggagcaactgtcttgctcaatttctaaaagctggcgcgatccctgggggagcgggCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTcgc > 1:304809‑M2/60‑113 (MQ=255) cTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGc > 5:118861/1‑149 (MQ=255) cTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGc > 3:289927/1‑149 (MQ=255) cTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGc > 6:244043/1‑149 (MQ=255) gATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCg > 4:203088/1‑147 (MQ=255) gATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCg < 3:203088/147‑1 (MQ=255) aGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCTCTGCGGccctttc < 4:36874/148‑5 (MQ=255) gggCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCaa > 8:26967/1‑149 (MQ=255) tgggggGTGCTGTCCCGCCCTTCGCCACACATGGGGGC‑TGCCCGGCTACCCAACCCGGTTGGGGTTTGCCTGGGGTTGCGCCGGTGTTGGGGGGAATCCCCGCTCCCACAGGTCGCGAATGGGCCGCAGAGCGGCCCCGGCAATCTAg < 2:121234/146‑1 (MQ=255) gtgCAGCCCATGGCGACACAAGGGGGCTTGCCCGCGAAGCCAACACCGTGGTGTATGGCAGGGGCTT‑CGCCCTTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaa < 2:205792/149‑1 (MQ=37) cAGCCAATCGCCACACAAGCGGGTTTGCCCGCTAAGCAAACACCGTGGTGTATGGCAGGGGCTT‑CCCCGGTGTTCGCGGGAAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagcc < 1:175043/149‑1 (MQ=255) aGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagcc > 1:334239/1‑148 (MQ=255) gCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccg > 7:293620/1‑148 (MQ=255) aTCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaagc < 8:59904/149‑1 (MQ=255) aTCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaagc > 7:52530/1‑149 (MQ=255) gACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGc < 7:26967/149‑1 (MQ=255) acacacGCGGGATTGCCCGCTACGCCAACCCCGTGGTGGATGCCACGGGCTG‑CGCCCGTGTCCGCGGGCACGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCg < 8:52530/149‑1 (MQ=38) acaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGa > 8:102872/1‑121 (MQ=255) acaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGa < 7:102872/121‑1 (MQ=255) aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGAt < 8:157828/126‑1 (MQ=255) aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGAt > 7:157828/1‑126 (MQ=255) aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAc > 3:57973/1‑149 (MQ=255) gCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGaa > 7:183634/1‑114 (MQ=255) | CGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGT‑ACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTT‑CGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAC > NC_002947/2071020‑2071309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |