New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1419549 =	25 (0.460)	5 (0.120)	4/202	NT	21.6%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	1419637 =	17 (0.410)					intergenic (‑126/+10)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

TGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGG  >  NC_002947/1419491‑1419780                                                                                                                                                     |                                                                                                                                                agttgcagatgcggtcgcatttacccacagagcctcacaccttgcattagcaggtcaggcctcttcgcgggcacgcccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagagg                                                                                                                                                 <  8:103569‑M2/1‑1 (MQ=255)     gtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGTTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCAGCGAAGAGGCCTGa                                                                                                                                            >  5:343129/1‑149 (MQ=255)        ttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAAGCCCGCGACCACCGGTACTGTGGAGTGCGTGACGGGGGGGGTGCCGCGGTGGGTGCGGGCGTG‑GCCGGGGAGAGCCCTGACCt                                                                                                                                         >  8:314121/1‑149 (MQ=255)             ggTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTACCACAGGTACGGTGCAGTGCGTGACGGCTGTGGGGACCCAGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCAGCTaa                                                                                                                                    >  2:101317/1‑149 (MQ=38)                   cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGGTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGCCCTGCTAATGGAAg                                                                                                                              >  5:100958/1‑149 (MQ=37)                          ttgtttCCCTGCATGCGGGGTTGCCTGGGCGGGCCTCTTCCCGGCCACGCCCGCGCCCACCGCTACTGGGCAGTGCGGCACGGCTGTGGTGACCCGGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGa                                                                                                                        <  3:251279/148‑1 (MQ=255)                          tcttttCCGTGGATTCTGGTTTGCCTGGGCTGGCCTCTTCGCTGGCAGGCCCGCTCCCACTGGTACTGTGCTGTGCTTGAGGGGTGTGGTTACCCTGTGGGAGGGGGCTTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGa                                                                                                                        <  6:318991/145‑1 (MQ=255)                            gttcCCCTGTATTCTGGGTGGCCGGGGCGGGCCTCTTCGCGGGCACGCCCGCTCCCACCGGTCCTGTGCAGGGCGGGACGGCTGTGGTGACCCGGTGGGAGCGGGGGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAgg                                                                                                                      <  6:100958/148‑1 (MQ=25)                              ttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGGAGTGCGTGACGGCTGTGGTGACCGTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGGAAGGTGTGa                                                                                                                        >  5:318991/1‑144 (MQ=37)                               tCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTAGCCGGCACCCCCCCTCCCAAACGTAAAGTGCACTTCGTGAAGGCTGTGGTTAACCAGTTGGAGCGGGCCTT‑GCCCCCAAAAAGCCAGACCAGCGAATGAAAAGTGTGAAGcgat                                                                                                                  >  4:80873/1‑146 (MQ=255)                                     gATTCTGGGGTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCCCAGGTACTGTGCAGTGCGTGACGGCTGTGGGGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTgg                                                                                                              <  5:180943/147‑1 (MQ=37)                                     gATGCTGGGTTGCCTGGGCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGGGGTTACCCTGGGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTgg                                                                                                              <  1:101317/147‑1 (MQ=37)                                       ttCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTa                                                                                                           >  1:235406/1‑148 (MQ=255)                                          tGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTTCTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGGG‑CCCGCGAAGAGGCCTGACCGGCTAATGCAAGGTGTGTGGCTCTGTGGGTAAATg                                                                                                       >  5:315798/1‑149 (MQ=37)                                          tGGGGTGCGTGGGCTGGCCTCTTCGCGGGCACGCGCGCTCCCAGTGGTACTGTGCAGTGCGTGACGGCTGTGGTGTCCCTGGGGGAGCGGGCGTGCCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAAt                                                                                                        <  1:85498/149‑1 (MQ=255)                                                           cCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACt                                                                                      <  8:103569‑M1/148‑1 (MQ=255)                                                                    GGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACg                                                                             <  7:302166‑M1/149‑1 (MQ=255)                                                                       CACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCt                                                                                                                                              <  1:73262‑M1/81‑1 (MQ=255)                                                                        ACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTCGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGACTGACCTGCTAATGCAAGGTCTGAGGCTCTGTGGGTAAATGCGCCCGCATCTGCAACTGCATCAACGCCGa                                                                         <  6:323479‑M1/149‑1 (MQ=255)                                                                           CCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTc                                                                      >  8:302166‑M1/1‑149 (MQ=255)                                                                              GCTCCCACTGGTAGTGTGCCGTGGGTTACGGGTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCTAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc                                                                   >  2:85747‑M1/1‑149 (MQ=255)                                                                               gctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc                                                                   >  1:177495‑M2/71‑149 (MQ=255)                                                                               gctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc                                                                   >  1:97989‑M2/71‑149 (MQ=255)                                                                                ctcccacagggtcaccacagccgtcacgcactgcaaagtacctgtgggagcgggcgtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc                                                                   >  1:225878‑M2/70‑148 (MQ=255)                                                                                TCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc                                                                   <  7:260114‑M1/147‑1 (MQ=255)                                                                                 tcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGAc                                                                        >  1:205394‑M2/69‑142 (MQ=255)                                                                                 tcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagcgggcgtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGAc                                                                        <  2:205394‑M2/74‑1 (MQ=255)                                                                                  CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgtg                                                                                                               >  8:321344‑M1/1‑101 (MQ=255)                                                                                  CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgtg                                                                                                               <  7:321344‑M1/101‑1 (MQ=255)                                                                                  CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGc                                                               <  3:64762‑M1/149‑1 (MQ=255)                                                                                  CCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGAAACTGCATCAACGCCGACTCGACCAGc                                                               <  3:16300‑M1/149‑1 (MQ=255)                                                                                      AGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc                                                                   >  5:58271‑M1/1‑141 (MQ=255)                                                                                      AGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGAc                                                                   <  6:58271‑M1/141‑1 (MQ=255)                                                                                        GTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAAt                                                                                                        <  2:24988‑M1/102‑1 (MQ=255)                                                                                        GTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAAt                                                                                                        >  1:24988‑M1/1‑102 (MQ=255)                                                                                              tgCTGTGCGTGACGGCTGTGGTGAGCCTGTGGGAGCTGGCGTG‑GCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTAcc                                                      <  6:343129/146‑1 (MQ=255)                                                                                              tgCAGTGCGTGAGGGATGTGGCGACCGTGTGGGTGGGGGCGGG‑CCCGGTAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTAcc                                                      <  3:80873/146‑1 (MQ=255)                                                                                                                tggtgACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACg                                 >  5:145197/1‑149 (MQ=255)                                                                                                                  gtgACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGtgtg                                                                                                                         <  5:93573/59‑1 (MQ=255)                                                                                                                  gtgACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGtgtg                                                                                                                         >  6:93573/1‑59 (MQ=255)                                                                                                                  gtgACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGc                               >  7:320292/1‑149 (MQ=255)                                                                                                                      cccTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGc                           <  2:235406/149‑1 (MQ=255)                                                                                                                        cctgtgggagcgggcgtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCACTGTACCCCTTCCATTTCATGGATCACGGCCTGCa                          >  8:302369‑M2/30‑149 (MQ=255)                                                                                                                                       gtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCAt                                         >  5:312641‑M2/15‑119 (MQ=255)                                                                                                                                       gtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCAt                                         <  6:312641‑M2/105‑1 (MQ=255)                                                                                                                                       gtgcccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCtgt           <  2:177495‑M2/135‑1 (MQ=255)                                                                                                                                          cccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTggg        >  1:333330‑M2/12‑149 (MQ=255)                                                                                                                                           ccgcgaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGc       >  3:259956‑M2/11‑149 (MQ=255)                                                                                                                                               gaagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTg   <  7:103569‑M2/143‑1 (MQ=255)                                                                                                                                                aagagGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTgg  <  2:333330‑M2/144‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                TGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTG‑CCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCATCTGCAACTGCATCAACGCCGACTCGACCAGCCCCTGTACCGCTTCCATTTCATGGATCACGGCCTGCATCACGATCGAGCTGTGGGCGGTGG  >  NC_002947/1419491‑1419780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.