| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499436 = | 44 (0.810) | 12 (0.240) | 6/240 | NT | 30.5% | intergenic (+13/‑151) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | 1499517 = | 14 (0.280) | intergenic (+94/‑70) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
GCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑T‑CGGGCA‑CG‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGAAACTGCGGT > NC_002947/1499389‑1499663 | gCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGc < 3:49821/149‑1 (MQ=21) aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGc < 7:77785/148‑1 (MQ=21) aaCGAAGCCTTGCCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCggg < 3:216054/147‑1 (MQ=21) gCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGGGAAACAGGCGCCCCGGGGGATGGCACCGGCTTTGCCGGTGTTAG‑CGGGCC‑CGCCC‑GCGCCCACAGAATGCATGCCATTAAACGGGCCAAtagg > 6:262141/1‑146 (MQ=18) ggCACCACAGCAGGAGTGGGGCTGCCAAAGGGTGGGAGGGGGGGTGCCCGCTAAACTGGCGCGGGGGTGCATGGCACGGGCTTTGCGGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACa < 4:132613/148‑1 (MQ=21) ggCACCACAGCAGGACTGTGGCGGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCAGGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACa < 3:63644/148‑1 (MQ=21) ggCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCACCC‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACa < 1:242070/148‑1 (MQ=21) gCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGt < 3:112071/149‑1 (MQ=21) agcagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCC‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGcc > 7:235036/1‑149 (MQ=21) aGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt < 1:228925/147‑1 (MQ=21) ccAAACGGTGGGAGCGGGCGTGCACGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCa < 8:310694/103‑1 (MQ=14) ccAAACGGTGGGAGCGGGCGTGCACGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCa > 7:310694/1‑103 (MQ=14) tagggggCGTTCCCGCGAAACAGGCGCCGCGGTGCAGGGCACGGGCTTTGCCGGTGTTCG‑GGGGAA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc < 4:147555/145‑1 (MQ=255) GAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCA‑CG‑CCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATc > 8:255317‑M1/1‑149 (MQ=255) GCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCA‑CG‑CCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt > 7:151225‑M1/1‑149 (MQ=255) CGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTT‑CGCGGGCA‑CG‑CCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATg > 3:220638‑M1/1‑149 (MQ=255) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCG‑CGGGCA‑CGCCC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 1:253442/1‑147 (MQ=37) cgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccacAGACTGATTGCNATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 1:109984‑M2/67‑146 (MQ=255) cgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGCCTCCCt > 3:201237‑M2/67‑146 (MQ=255) cgcgaacaccggcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 1:113893‑M2/67‑146 (MQ=255) gcgaacaccggcaaagccggtgtcatgcaccgcggcgcctgtttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAg > 6:203978‑M2/66‑148 (MQ=255) gcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc > 4:4105‑M2/56‑133 (MQ=255) gcaaagccggtgccatgcaccgcggcgcctgtttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc < 3:4105‑M2/78‑1 (MQ=255) ccggtgttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGActtctt > 6:42686‑M2/30‑149 (MQ=255) cggtgttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTa < 5:84530‑M2/90‑1 (MQ=255) cggtgttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTa > 6:84530‑M2/29‑118 (MQ=255) cggtgttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACttcttc < 7:205013‑M2/121‑1 (MQ=255) gtgttcgcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCa < 5:42686‑M2/123‑1 (MQ=255) gcgggcacgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGAcgc > 1:255475‑M2/21‑149 (MQ=255) acgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAAc < 3:163765‑M2/65‑1 (MQ=255) acgcccgctcccacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAAc > 4:163765‑M2/15‑79 (MQ=255) cacAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATAATGACTCCCTTAGAAAGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGAAACTGCgg > 2:123672‑M2/4‑149 (MQ=255) acAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGAAACTGCGGt < 5:158075‑M2/147‑1 (MQ=255) | GCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGTT‑T‑CGGGCA‑CG‑CC‑GCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACTTCTTCCATGACGCGGCGCAGGAAACTGCGGT > NC_002947/1499389‑1499663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |