New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1967145 =	25 (0.460)	4 (0.100)	4/194	NT	17.9%	intergenic (+15/+104)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	1967241 =	18 (0.450)					intergenic (+111/+8)	PP_1762/yciK	hypothetical protein/putative oxidoreductase

TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCGGGGTAGGCCTGGGCCCGCATCGCCGTGC  >  NC_002947/1967116‑1967388                                                                                                                              |                                                                                                                                                    ttGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAAc                                                                                                                              <  5:278386/149‑1 (MQ=255)           gCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGaa                                                                                                                               <  1:230468/138‑1 (MQ=255)           gCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGaa                                                                                                                               >  2:230468/1‑138 (MQ=255)              gATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTTCCCCCAACCACAGGATAACCCCAACCCACAAAGATTTGGCCCGGCCTGTGGGGGCGGGGAAGCCCGCGAAGACGGCGATGGACGTTTATTGTGGGTTGAACGCCGGCCCggtg                                                                                                                  >  4:263601/1‑145 (MQ=255)                                   TCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCGCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGccc                                                                                              <  7:77326‑M1/147‑1 (MQ=255)                                    CTTCGCGGGCTTGCCCGCTCCCACAGGATCAACGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGGCGATGCAGGGTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCAt                                                                                           <  6:334549‑M1/149‑1 (MQ=255)                                       CGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATca                                                                                         >  3:263601‑M1/1‑148 (MQ=255)                                                   CGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTacac                                                                            <  7:188362‑M1/149‑1 (MQ=255)                                                   CGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTacac                                                                            <  4:78044‑M1/149‑1 (MQ=255)                                                    gctcccacaggcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGcccc                                                                                             >  1:166215‑M2/75‑131 (MQ=255)                                                    gctcccacaggcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGcccc                                                                                             <  2:166215‑M2/57‑1 (MQ=255)                                                       cccacaggcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTc                                                                                                                  >  3:263436‑M2/72‑107 (MQ=255)                                                       cccacaggcagggcgcaatccttgagggttgcggtgatcctgtgggagcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTc                                                                                                                  <  4:263436‑M2/36‑1 (MQ=255)                                                         CACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCAt                                                                      <  5:30516‑M1/149‑1 (MQ=255)                                                         CACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCAt                                                                      <  2:166846‑M1/149‑1 (MQ=255)                                                          ACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCAt                                                                      <  3:168441‑M1/148‑1 (MQ=255)                                                          ACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCAt                                                                      <  6:295217‑M1/148‑1 (MQ=255)                                                                tCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtacag                                                                                  >  4:69878/1‑130 (MQ=255)                                                                tCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtacag                                                                                  <  3:69878/130‑1 (MQ=255)                                                                  aCCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTc                                                             <  8:77326/149‑1 (MQ=255)                                                                   ccGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCg                                                            >  7:189201/1‑149 (MQ=255)                                                                   ccGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCg                                                            >  7:245207/1‑149 (MQ=255)                                                                    cGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCgg                                                           <  8:188362/149‑1 (MQ=255)                                                                     gCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCggg                                                          <  4:168441/149‑1 (MQ=255)                                                                            tCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGACGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCggg                                                   >  2:83808/1‑149 (MQ=255)                                                                              acggATTGCGCCGGGCCGGGGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGgtt                                                 <  3:284712/147‑1 (MQ=255)                                                                              aaGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGgtt                                                 <  3:78044/149‑1 (MQ=255)                                                                                      cgcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtacag                                                                                  <  5:49266/108‑1 (MQ=255)                                                                                      cgcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtacag                                                                                  >  6:49266/1‑108 (MQ=255)                                                                                       gcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCt                                                                                                                          >  5:306330/1‑67 (MQ=255)                                                                                       gcCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCt                                                                                                                          <  6:306330/67‑1 (MQ=255)                                                                                          ctgcctgTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGc                                                                                                                                     <  2:179723/53‑1 (MQ=255)                                                                                          ctgcctgTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGc                                                                                                                                     >  1:179723/1‑53 (MQ=255)                                                                                             cctgtgggagcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtaca                                                                                   <  2:126862‑M2/67‑1 (MQ=255)                                                                                             cctgtgggagcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATcaggtaca                                                                                   >  1:126862‑M2/34‑100 (MQ=255)                                                                                                 tgggagcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGc                                <  5:295217‑M2/118‑1 (MQ=255)                                                                                                    gagcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCgggg                           >  1:74416‑M2/27‑149 (MQ=255)                                                                                                      gcgggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCgggg                           >  4:306241‑M2/25‑147 (MQ=255)                                                                                                        gggcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCGGGGTAgg                       <  1:83808‑M2/127‑1 (MQ=255)                                                                                                          gcaagcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCGGGGTAGGcc                     >  8:197677‑M2/21‑149 (MQ=255)                                                                                                             agcccgcgaagaggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCGGGGTAGGCCTgg                  <  6:148655‑M2/132‑1 (MQ=255)                                                                                                                        aggccgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCGGGGTAGGCCTGGGCCCGCATCGc       >  7:29653‑M2/7‑149 (MQ=255)                                                                                                                            cgATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCGGGGTAGGCCTGGGCCCGCATCGCCGTg   <  3:306241‑M2/147‑1 (MQ=255)                                                                                                                             gATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCGCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTTCGGGTTCTCGCCGGGGTAGGCCTGGGCCCGCATCGCCGTGc  <  2:74416‑M2/148‑1 (MQ=255)                                                                                                                              |                                                                                                                                                    TTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCATGATCTCTTCGGGCAGCGGGTTGTTCTGCGGGTTCTCGCCGGGGTAGGCCTGGGCCCGCATCGCCGTGC  >  NC_002947/1967116‑1967388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.