New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2239668 =	49 (0.910)	3 (0.060)	3/250	NT	6.1%	coding (69/1164 nt)	PP_1976	HlyD family secretion protein
	?	NC_002947	2239702 =	45 (0.870)					coding (35/1164 nt)	PP_1976	HlyD family secretion protein

CCAGGAAGGCGAGGGCGATGATGGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTGCCTACATCGCCCTGTTC  >  NC_002947/2239556‑2239849                                                                                                                                                   |                                                                                                                                                    gccggtaggcgatggcgcaatacgcgtgcgtacggtggtcatggagagtctcgaacgaaagatgaaacaaaggcgggatgttagcaggaggcgggcaccgggctccagcaatGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCAtt                                                                                                                                                   <  7:141835‑M1/37‑1 (MQ=255) gccggtaggcgatggcgcaatacgcgtgcgtacggtggtcatggagagtctcgaacgaaagatgaaacaaaggcgggatgttagcaggaggcgggcaccgggctccagcaatGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCAtt                                                                                                                                                   >  6:166208‑M1/113‑149 (MQ=255)  cAGGAAGGCGAGGGCGATGATGGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTg                                                                                                                                                  <  8:176448/149‑1 (MQ=255)    ggtaggcgatggcgcaatacgcgtgcgtacggtggtcatggagagtctcgaacgaaagatgaaacaaaggcgggatgttagcaggaggcgggcaccgggctccagcaatGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCt                                                                                                                                                >  8:141835‑M1/110‑149 (MQ=255)    ggAAGGCGAGGGCGATGATGGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCt                                                                                                                                                <  8:199079/149‑1 (MQ=255)    ggAAGGCGAGGGCGATGATGGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCt                                                                                                                                                >  2:17344/1‑149 (MQ=255)     gAAGGCGAGGGCGATGATGGCCACCAGGGCGAAGAAGAGCGTCAGGCTGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTg                                                                                                                                               <  2:22418/149‑1 (MQ=255)     gAAGGCGAGGGCGATGATGGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTg                                                                                                                                               <  1:156917/149‑1 (MQ=255)            aGGGCGATGATGGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCg                                                                                                                                        <  8:76041/149‑1 (MQ=255)                  atgatgGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGccc                                                                                                                                  <  5:132425/149‑1 (MQ=255)                     atgGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGc                                                                                                                                <  1:321417/148‑1 (MQ=255)                      tgGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGcct                                                                                                                              >  2:316199/1‑149 (MQ=255)                         ccacaaGGGCGAAGAAGAGCGTCAGGAGGCGATTGAGTAGTGCAGGAATGGGGACTATAGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGCCACGTGACGTTCGCGCCATTGATGGAGCCCGGTGCACGgcacct                                                                                                                           >  4:80804/1‑149 (MQ=255)                            ccaGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCt                                                                                                                        <  1:316199/149‑1 (MQ=255)                             caGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCt                                                                                                                        >  1:15861/1‑148 (MQ=255)                                            cGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGt                                                                                                        >  6:103221/1‑149 (MQ=255)                                              tCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATGGTTCCAGAAATTTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCGATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGttt                                                                                                      <  6:114879/149‑1 (MQ=255)                                                aGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCa                                                                                                    <  5:103221/149‑1 (MQ=255)                                                 ggcggcGTTCGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCAt                                                                                                   >  2:183942/1‑149 (MQ=255)                                                  gcggcgTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATc                                                                                                  >  3:96103/1‑149 (MQ=255)                                                   cggcgTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCt                                                                                                 <  2:15861/149‑1 (MQ=255)                                                    ggcgTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCtt                                                                                                <  4:165911/149‑1 (MQ=255)                                                       gTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCttt                                                                                                          >  3:219473/1‑136 (MQ=255)                                                       gTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCttt                                                                                                          <  4:219473/136‑1 (MQ=255)                                                       gTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTttcg                                                                                             >  6:312302/1‑149 (MQ=255)                                                        tttGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTttcgt                                                                                            >  8:116058/1‑149 (MQ=255)                                                           gAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTttcgttc                                                                                          <  1:199206/148‑1 (MQ=255)                                                                 ggcaggcaTGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGttt                                                                                                      <  6:172177/130‑1 (MQ=255)                                                                 ggcaggcaTGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGttt                                                                                                      >  5:172177/1‑130 (MQ=255)                                                                    aggcaTGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTcc                                                                                <  1:17344/149‑1 (MQ=255)                                                                     ggcaTGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCa                                                                               <  1:183942/149‑1 (MQ=255)                                                                        aTGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGa                                                                            >  6:255509/1‑149 (MQ=255)                                                                        aTGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGa                                                                            <  5:312302/149‑1 (MQ=255)                                                                                tATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCgag                                                                                       <  3:336805/130‑1 (MQ=255)                                                                                tATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCgag                                                                                       >  4:336805/1‑130 (MQ=255)                                                                                  tCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATccc                                                                                                                >  3:295485/1‑103 (MQ=255)                                                                                  tCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATccc                                                                                                                <  4:295485/103‑1 (MQ=255)                                                                                  tCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATccc                                                                                                                <  4:290712/103‑1 (MQ=255)                                                                                  tCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATccc                                                                                                                >  3:290712/1‑103 (MQ=255)                                                                                  tCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGacca                                                                         >  1:336500/1‑142 (MQ=255)                                                                                  tCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGacca                                                                         <  2:336500/142‑1 (MQ=255)                                                                                        cAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCAcgcg                                                            >  3:218139/1‑149 (MQ=255)                                                                                                tAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTgcg                                                     <  5:255509/148‑1 (MQ=255)                                                                                                 aaaCAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTgc                                                      <  7:44142/146‑1 (MQ=255)                                                                                                 aaaCAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTgc                                                      >  8:44142/1‑146 (MQ=255)                                                                                                         ttAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTa                                           >  6:35177/1‑149 (MQ=255)                                                                                                           agcaatggcgcgaacgtcacttgtcgacgggccctgcgccATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTAcc                                         >  8:141835‑M2/41‑149 (MQ=255)                                                                                                              aatggcgcgaacgtcacttgtcgacgggccctgcgccATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGc                                      >  6:166208‑M2/38‑149 (MQ=255)                                                                                                              aatggcgcgaacgtcacttgtcgacgggccctgcgccATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGc                                      <  7:141835‑M2/112‑1 (MQ=255)                                                                                                                  GCGCTGGGCCCGTCGACAAGTTAGGTTCGCGCCTTTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACCTCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGCCGAcc                                  >  3:80804‑M1/1‑149 (MQ=255)                                                                                                                  GCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATGCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACAGTACGCACGCGTATTGCGCCATCGCCTACCGGCGAcc                                  >  4:96103‑M1/1‑149 (MQ=255)                                                                                                                                 aCAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTg                   >  3:216445/1‑149 (MQ=255)                                                                                                                                     gTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTGCCTa               >  4:1145/1‑149 (MQ=255)                                                                                                                                     gTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTGCCTa               <  4:216445/149‑1 (MQ=255)                                                                                                                                           ttCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTGCCTACATCGc         >  5:141913/1‑149 (MQ=255)                                                                                                                                              gcgccATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTGCCTACATCGccc       <  7:116058‑M2/143‑1 (MQ=255)                                                                                                                                                gccATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTGCCTACATc           >  4:257804‑M2/4‑142 (MQ=255)                                                                                                                                                gccATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTGCCTACATc           <  3:257804‑M2/139‑1 (MQ=255)                                                                                                                                                   aTTGCTGGAGCCCGGTGCCCGCCTCCTCCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGAGCCATCGCCTACCGGCGCGCCCCATGTCGGCACTGCCTACATCGCCCTGTTc  >  5:350446/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CCAGGAAGGCGAGGGCGATGATGGCCACCAGGGCGAAGAAGAGCGTCAGGCGGCGTTTGAGTTGGGCAGGCATGGGGACTATCGTTCCAGAAATGTAAACAAATTTAACAGCGGCGCAGGGCCCGTCGACAAGTGACGTTCGCGCCATTGCTGGAGCCCGGTGCCCGCCTCCTGCTAACATCCCGCCTTTGTTTCATCTTTCGTTCGAGACTCTCCATGACCACCGTACGCACGCGTATTGCGCCATCGCCTACCGGCGACCCCCATGTCGGCACTGCCTACATCGCCCTGTTC  >  NC_002947/2239556‑2239849

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.