New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2301453 =	0 (0.000)	50 (0.950)	45/254	NT	100%	intergenic (‑97/‑234)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	2925429 =	NA (NA)					intergenic (‑177/+388)	PP_2563/PP_2564	antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase

GTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCC  >  NC_002947/2925290‑2925570                                                                                                                                             |                                                                                                                                              gTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCGCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCa                                                                                                                                        <  5:240409/147‑1 (MQ=255)      acaACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTc                                                                                                                                 <  1:215354/149‑1 (MQ=255)        aaCGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCg                                                                                                                               >  1:271062/1‑149 (MQ=255)          cGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCggg                                                                                                                             <  2:271062/149‑1 (MQ=255)                     gctggctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCg                                                                                                                               >  2:91179/1‑136 (MQ=255)                     gctggctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCg                                                                                                                               <  1:91179/136‑1 (MQ=255)                     gctggctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCg                                                                                                                  <  4:168034/149‑1 (MQ=255)                      ctggctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGc                                                                                                                 <  2:294118/149‑1 (MQ=255)                      ctggctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGc                                                                                                                 <  6:237752/149‑1 (MQ=255)                         gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGcc                                                                                                                                     <  3:138214/126‑1 (MQ=255)                         gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGcc                                                                                                                                     >  4:138214/1‑126 (MQ=255)                         gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGcaca                                                                                                              <  6:25288/149‑1 (MQ=255)                         gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGca                                                                                                                >  5:25288/1‑147 (MQ=255)                         gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGca                                                                                                                <  3:314442/147‑1 (MQ=255)                         gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGca                                                                                                                >  3:43867/1‑147 (MQ=255)                           tgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTACATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAg                                                                                                             >  6:351558/1‑148 (MQ=255)                              tGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCaaa                                                                                                         <  5:198681/149‑1 (MQ=255)                               ggCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCaaa                                                                                                         >  8:530/1‑148 (MQ=255)                                gcgcCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAAc                                                                                                        <  7:106724/148‑1 (MQ=255)                                    cAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGAt                                                                                                   >  3:143462/1‑149 (MQ=255)                                           tGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCAt                                                                                             >  4:70914/1‑148 (MQ=255)                                           tGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCAt                                                                                             <  2:284314/148‑1 (MQ=255)                                             aaGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGa                                                                                           <  3:70914/148‑1 (MQ=255)                                                     cTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATc                                                                                  >  6:67861/1‑149 (MQ=255)                                                       tGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAAc                                                                                                        <  6:165198/125‑1 (MQ=255)                                                       tGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAAc                                                                                                        >  5:165198/1‑125 (MQ=255)                                                        gCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTg                                                                                <  4:143462/148‑1 (MQ=255)                                                             acccGGGCAGGGCCAGGGCCGCAAGCGTGCCCCAATAAAACCCTGCTAACCCGACGGGTTAGGGGTTGTTCCATGGGAGTATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACt                                                                            <  1:103836/146‑1 (MQ=25)                                                                     aGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCgaga                                                                  <  3:282052/149‑1 (MQ=255)                                                                          cAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGAc                                                                                          >  8:209555/1‑120 (MQ=255)                                                                          cAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGAc                                                                                          <  7:209555/120‑1 (MQ=255)                                                                          cAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATc                                                                >  1:63288/1‑146 (MQ=255)                                                                              gCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaaaa                                                         <  4:43867/149‑1 (MQ=255)                                                                                   aaGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCAtt                                                    >  2:313170/1‑149 (MQ=255)                                                                                    aGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTc                                                   <  5:67861/149‑1 (MQ=255)                                                                                         gCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGa                                              >  2:244439/1‑149 (MQ=255)                                                                                         gCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATAACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGa                                              >  3:62646/1‑149 (MQ=255)                                                                                          cccccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAc                                             <  1:244439/149‑1 (MQ=255)                                                                                          cccccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAc                                             <  5:1058/149‑1 (MQ=255)                                                                                          cccccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAc                                             <  7:530/149‑1 (MQ=255)                                                                                             ccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCg                                                                                                                               >  4:114387/1‑64 (MQ=255)                                                                                             ccATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCg                                                                                                                               <  3:114387/64‑1 (MQ=255)                                                                                                   aaCCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCggg                                    >  3:67835/1‑149 (MQ=255)                                                                                                      ccTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCt                                                                                 >  7:289648/1‑101 (MQ=255)                                                                                                      ccTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCt                                                                                 <  8:289648/101‑1 (MQ=255)                                                                                                       cTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAgg                                <  1:313170/149‑1 (MQ=255)                                                                                                                cGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGt                                   >  4:289833/1‑137 (MQ=255)                                                                                                                cGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGt                                   <  3:289833/137‑1 (MQ=255)                                                                                                                          gCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGcaca                                                                                                              >  7:215381/1‑52 (MQ=255)                                                                                                                          gCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGcaca                                                                                                              <  8:215381/52‑1 (MQ=255)                                                                                                                                     aTGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTcc   >  5:496/1‑148 (MQ=32)                                                                                                                                      tGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTccc  >  5:193002/1‑148 (MQ=31)                                                                                                                                             |                                                                                                                                              GTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGACGGGTTAGCGGTTGTTCCATGGGAG‑ATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCC  >  NC_002947/2925290‑2925570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.