New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2974744	50 (0.920)	6 (0.120)	6/246	NT	11.3%	coding (677/777 nt)	PP_2601	IclR family transcriptional regulator
	?	NC_002947	= 2974769	47 (0.920)					coding (702/777 nt)	PP_2601	IclR family transcriptional regulator

GGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTC  >  NC_002947/2974640‑2974911                                                                                                                                    |                                                                                                                                               ggTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTAttgt                                                                                                                             >  1:335908/1‑149 (MQ=255)     gAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATtgttgt                                                                                                                          <  2:326342/148‑1 (MQ=255)             cTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTAttg                                                                                                                              <  1:151657/136‑1 (MQ=255)             cTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTAttg                                                                                                                              >  2:151657/1‑136 (MQ=255)              tCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCag                                                                                                                 >  8:42678/1‑148 (MQ=255)                 gCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCagaa                                                                                                               >  3:171703/1‑147 (MQ=255)                        gCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTcg                                                                                                      >  2:11963/1‑149 (MQ=255)                              cAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGcc                                                                                                >  7:238447/1‑149 (MQ=255)                               aGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCggcggc                                                                                                 >  2:177325/1‑147 (MQ=255)                               aGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCa                                                                                               <  2:335908/149‑1 (MQ=255)                                 cccTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCTGGCCCAGCGCGCGGC‑‑TGGCACAGAGACGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGTCGGCCAgg                                                                                             >  8:301120/1‑148 (MQ=255)                                           aGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCg                                                                                   <  1:11963/149‑1 (MQ=255)                                               gtgCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCt                                                                               <  3:215529/149‑1 (MQ=255)                                                 gcgcCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGc                                                                                    >  8:318552/1‑142 (MQ=255)                                                 gcgcCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGc                                                                                    <  7:318552/142‑1 (MQ=255)                                                  cgccgcCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGt                                                                             <  4:171703/148‑1 (MQ=255)                                                   gccgccCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGttt                                                                           <  8:238447/149‑1 (MQ=255)                                                    ccgcccgcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGTGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGtt                                                                            >  1:98996/1‑149 (MQ=255)                                                     cgcccgcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGc                                                                         <  1:177325/149‑1 (MQ=255)                                                          gcAAAGTGACTAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGAACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAg                                                                    >  4:330591/1‑149 (MQ=255)                                                                tGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTATGCCTGAGGGAata                                                              >  6:278543/1‑149 (MQ=255)                                                                          aTTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGa                                                    >  3:13515/1‑149 (MQ=255)                                                                            tGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGAt                                                   <  8:273748/148‑1 (MQ=255)                                                                              gCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTAc                                                >  4:96521/1‑149 (MQ=255)                                                                                 tGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCg                                              >  3:142469/1‑148 (MQ=255)                                                                                    tGAGCATCGCCGGGTCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGca                                            >  7:236623/1‑147 (MQ=255)                                                                                    tGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGca                                            >  6:316308/1‑147 (MQ=255)                                                                                     gAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAg                                         >  6:267448/1‑149 (MQ=255)                                                                                        cATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCt                                      >  1:189170/1‑149 (MQ=255)                                                                                            gCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTg                                                                      <  8:26381/113‑1 (MQ=255)                                                                                            gCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTg                                                                      >  7:26381/1‑113 (MQ=255)                                                                                            gCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGtt                                   <  7:42678/148‑1 (MQ=255)                                                                                            gCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGtt                                   <  3:96521/148‑1 (MQ=255)                                                                                             ccGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAgcgctggcaccggcgatgctcagcacgccaatcacctcgtcgctttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcctcgacccaggca                                 <  5:246993‑M2/149‑112 (MQ=255)                                                                                             ccGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTgc                                 >  6:143934/1‑149 (MQ=255)                                                                                              cGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggag                                                   >  4:93613‑M2/1‑37 (MQ=255)                                                                                              cGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggag                                                   <  3:93613‑M2/130‑94 (MQ=255)                                                                                               gggCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTgcgc                               <  3:330591/149‑1 (MQ=255)                                                                                                 gCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGccc                             >  4:217984/1‑149 (MQ=255)                                                                                                 gCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCGGAgg                                                                   >  8:169998/1‑111 (MQ=255)                                                                                                  cccAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcctcgacccaggcataacc                            <  1:52924‑M2/149‑117 (MQ=255)                                                                                                   ccAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGt                           <  2:98996/149‑1 (MQ=255)                                                                                                   ccAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGCTGCGCCCGt                           >  4:238236/1‑149 (MQ=255)                                                                                                          gcgGC‑‑TGGCACAGAGCCGCCTCGCAgcgctgggcccggcgatgctcagcacgccaatcacctcgtcactttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcctcgacccaggcataaccacgctcgc                    >  2:52924‑M2/1‑25 (MQ=255)                                                                                                             gC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTtcttct                     >  4:83248/1‑145 (MQ=255)                                                                                                             gC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTtcttct                     <  3:83248/145‑1 (MQ=255)                                                                                                             gC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGaa                  >  4:103047/1‑148 (MQ=255)                                                                                                                     acaGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGCTGCGCCCGTTCTTCTGAAAAGCTGa           <  3:238236/149‑1 (MQ=255)                                                                                                                         agCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACtt       >  6:138997/1‑149 (MQ=255)                                                                                                                           ccgccTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTgg     <  8:236623/149‑1 (MQ=255)                                                                                                                             gccTCGCAgcgctggcaccggcgatgctcagcacgccaatcacctcgtcgctttgcgggcggcgcaccactgcggccagggctgaggtgccgatggcggaggtttcctcgacccaggcataaccacgctcgcgggcgcggtgcaggtag   >  6:246993‑M2/1‑8 (MQ=255)                                                                                                                              ccTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTc  >  5:20691/1‑149 (MQ=255)                                                                                                                              ccTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTc  >  3:284377/1‑149 (MQ=255)                                                                                                                                  gCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTc  >  6:303489/1‑145 (MQ=255)                                                                                                                                  gCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTc  <  5:303489/145‑1 (MQ=255)                                                                                                                                    |                                                                                                                                               GGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGC‑‑TGGCACAGAGCCGCCTCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTC  >  NC_002947/2974640‑2974911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.