New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6019248 =	53 (0.980)	5 (0.110)	4/214	NT	12.3%	intergenic (‑49/+96)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	6019324 =	28 (0.630)					intergenic (‑125/+20)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase

TCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGCG  >  NC_002947/6019178‑6019472                                                                                                                                                   |                                                                                                                                                     tCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCaaa                                                                                                                                                    >  1:200687/1‑149 (MQ=255)   aGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATg                                                                                                                                                  >  5:9573/1‑149 (MQ=255)               ggACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAgg                                                                                                                                      >  6:60440/1‑149 (MQ=255)               ggACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAgg                                                                                                                                      <  2:107909/149‑1 (MQ=255)                gACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGc                                                                                                                                     <  2:200687/149‑1 (MQ=255)                  cGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTg                                                                                                                                   <  1:52248/149‑1 (MQ=255)                     aTAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCCGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTa                                                                                                                                <  7:199895/149‑1 (MQ=255)                        gCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTActg                                                                                                                             <  7:230881/149‑1 (MQ=255)                                   aTGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCCCAGGTCGTGCACAGCGTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGGTACGGCTGGTGCGCCg                                                                                                                  >  4:179016/1‑149 (MQ=38)                                       tggtTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTActgct                                                                                                                           <  5:153524/136‑1 (MQ=255)                                       tggtTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTActgct                                                                                                                           >  6:153524/1‑136 (MQ=255)                                         gtTCGGGTTGAACTCGGTGGTGGATTATTCGCGGGCTTCCCGGCTCCCACAGGTCGTCCACAGCTTTCAAAAGCGGGGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGgcgcgc                                                                                                            <  5:23324/149‑1 (MQ=39)                                         gtTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGgcgcgc                                                                                                            >  8:98254/1‑149 (MQ=255)                                          ttCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCCCGCt                                                                                                           >  7:100193/1‑149 (MQ=255)                                                ttGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGccc                                                                                                     <  2:43538/149‑1 (MQ=255)                                                ttGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGccc                                                                                                     <  7:218012/149‑1 (MQ=255)                                                       cGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTg                                                                                              >  2:43724/1‑149 (MQ=255)                                                        ggtggtGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTg                                                                                              <  7:98254/148‑1 (MQ=255)                                                         gtggtgGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGc                                                                                            <  5:60440/149‑1 (MQ=255)                                                           atcttattatcCGCGCGCTTGCCCGGCCCCACCGGGCGGGCACAGCGCTCAACAGCGGGGGTGTTCCTGTGGGAGGGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCa                                                                                          <  8:297302/144‑1 (MQ=255)                                                                attattCGCGGGCTTGCCCGCTCCCACAGGTCGTGCCCAGCTTTGAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCCCAGGCGGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCa                                                                                          >  7:297302/1‑144 (MQ=255)                                                                 ttattCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTcc                                                                                     <  4:241039/148‑1 (MQ=255)                                                                            CTTGCCCGCGCCCACAGGGCGGGCACCGCTTTGAAAAGGGGTTGGGTTCCTGGGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGGGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCa                                                                         >  6:9573‑M1/1‑149 (MQ=255)                                                                                CCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAAc                                                                     <  2:128598‑M1/149‑1 (MQ=255)                                                                                     tcccacaggaacaccaccgcttttgaaagctgtgcacgacctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACgg                                                                   >  4:257979‑M2/63‑146 (MQ=255)                                                                                       ccacaggaacaccaccgcttttgaaagctgtgcacgacctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGgaga                                                               >  2:277213‑M2/61‑148 (MQ=255)                                                                                       ccacaggaacaccaccgcttttgaaagctgtgcacgacctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGga                                                                 <  3:257979‑M2/86‑1 (MQ=255)                                                                                       ccacaggaacaccaccgcttttgaaagctgtgcacgacctgtgggagcgggcaagcccgcAAATGGGCAGGCACAGGCTGTTACTTCTCGTGAGCCGGCGCGCTATGACCGTGCTTGGCCACTTCCCTGCTATTGCCATAACGGgaga                                                               >  5:342138‑M2/61‑148 (MQ=255)                                                                                       CCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTgg                                                                                             >  6:148195‑M1/1‑118 (MQ=255)                                                                                       CCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTgg                                                                                             <  5:148195‑M1/118‑1 (MQ=255)                                                                                       CCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGgaga                                                               <  1:260108‑M1/148‑1 (MQ=255)                                                                                            ggaacaccaccgcttttgaaagctgtgcacgacctgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCa                                                         <  1:277213‑M2/94‑1 (MQ=255)                                                                                                     caGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCgg                                                <  1:43724/149‑1 (MQ=255)                                                                                                     caGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTAACTGCAGGTGAGCCGGCGCGCTTTGCCCTTGCTTGGCCACTTCCCGGCTATAGCCATAACGGGAGATATCCAGGCCTTCgg                                                >  5:204947/1‑149 (MQ=255)                                                                                                      aGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCgg                                                >  6:198151/1‑148 (MQ=255)                                                                                                             aaaaGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATcc                                                          >  5:186895/1‑131 (MQ=255)                                                                                                             aaaaGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATcc                                                          <  6:186895/131‑1 (MQ=255)                                                                                                                   ggtggtGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGc                                  >  4:301385/1‑149 (MQ=255)                                                                                                                      ggtgTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTAtt                                                                             <  8:13920/103‑1 (MQ=255)                                                                                                                      ggtgTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTAtt                                                                             >  7:13920/1‑103 (MQ=255)                                                                                                                        tgtTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGcttctt                             <  1:128598/149‑1 (MQ=255)                                                                                                                              tgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGga                                                                 <  4:221959‑M2/86‑1 (MQ=255)                                                                                                                              tgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGga                                                                 >  3:221959‑M2/22‑107 (MQ=255)                                                                                                                              tgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCCGGCCTTCGGCACTGATCTGCGGCTTCTTgcgcg                        >  7:2605‑M2/22‑148 (MQ=255)                                                                                                                              tgtgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTgcgcg                        >  5:114925‑M2/22‑148 (MQ=255)                                                                                                                                tgggagcgggcaagcccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCaa                     <  2:260108‑M2/130‑1 (MQ=255)                                                                                                                                               ccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCcag        >  5:54218‑M2/5‑147 (MQ=255)                                                                                                                                               ccgcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGACGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCcag        >  4:327292‑M2/5‑147 (MQ=255)                                                                                                                                                 gcAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAgg    >  3:306953‑M2/3‑149 (MQ=255)                                                                                                                                                   aaaTGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAggcg  >  5:143677/1‑149 (MQ=255)                                                                                                                                                   aaaTGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAggcg  <  5:198151/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGTCGTGCACAGCTTTCAAAAGCGGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCAAATGGGCCGGCACAGGCTGTTACTGCTGGTGAGCCGGCGCGCTTTGCCCGTGCTTGGCCACTTCCCGGCTATTGCCATAACGGGAGATATCCAGGCCTTCGGCACTGATCTGCGGCTTCTTGCGCGCAATCAGGTCGGCCAGCAGGCG  >  NC_002947/6019178‑6019472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.