Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,711,476 | G→C | 6.8% | A72G (GCG→GGG) | paaC ← | ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,711,476 | 0 | G | C | 6.8% | 187.2 / 4.6 | 59 | A72G (GCG→GGG) | paaC | ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta |
Reads supporting (aligned to +/- strand): ref base G (27/28); new base C (2/2); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.82e-01 |
CATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGC > NC_002947/3711333‑3711617 | cATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAgg < 7:209887/149‑1 (MQ=255) gACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggcatcg < 1:27799/147‑1 (MQ=255) gACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggcatcg < 6:184854/147‑1 (MQ=255) gACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCAtctc > 7:95555/1‑149 (MQ=255) gACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTAGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGTTAGGCGCGCTCGTCACGGCGGAACGCCATGGCATCGGCAtctc > 6:55932/1‑149 (MQ=255) aCCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCg > 5:302646/1‑149 (MQ=255) cAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGc > 2:309339/1‑149 (MQ=255) ccTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCAtcg > 4:18915/1‑149 (MQ=255) cagcaCGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCAtcgtc < 4:334766/147‑1 (MQ=255) aCGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGACGATGGCCGagatg < 3:294244/149‑4 (MQ=255) cGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGagcagc < 6:302646/149‑1 (MQ=255) cGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTcg < 3:18915/149‑1 (MQ=255) tGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCggcggc < 3:217639/149‑1 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCa > 8:325867/1‑148 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCa < 6:317996/148‑1 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCa > 5:197475/1‑148 (MQ=255) ccACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCa > 1:161167/1‑148 (MQ=255) cACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCAt > 8:101487/1‑148 (MQ=255) cACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATa > 2:25422/1‑149 (MQ=255) tcgtAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTccag < 7:325867/149‑1 (MQ=255) gAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGc > 3:27537/1‑149 (MQ=255) gAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGc > 7:259494/1‑149 (MQ=255) aaCTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCg < 7:101487/149‑1 (MQ=255) cTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggc > 8:142007/1‑90 (MQ=255) cTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGggc < 7:142007/90‑1 (MQ=255) ggtcatggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTgg < 8:259494/148‑1 (MQ=255) gtcatggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGc < 2:161167/148‑1 (MQ=255) tcatggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTAGTAACGGCGGAACGCCAGGGCATCGGCATATCGGCCCTCCTAGAGCAGCTAGGCGGCATACTACAGCCAGTTTCCGGCCTGGCCg > 1:94302/1‑149 (MQ=255) atggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCgg < 4:191327/96‑1 (MQ=255) atggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCgg > 3:191327/1‑96 (MQ=255) atggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGAc > 8:260728/1‑149 (MQ=255) tggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGAcc < 8:95555/149‑1 (MQ=255) ggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGag < 1:69120/105‑1 (MQ=255) ggtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGag > 2:69120/1‑105 (MQ=255) gtcaCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAg < 7:260728/149‑1 (MQ=255) aCGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGAc > 8:200803/1‑143 (MQ=255) aaaaTCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGc > 4:258724/1‑149 (MQ=255) aaaaTCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGc > 5:251529/1‑149 (MQ=255) aTCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGTCATACTCCAGCCAGtt < 5:128572/120‑1 (MQ=255) aTCACCGTTGGGTTGCTCGACCAGCAGCAGCTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCAATCCTCGAGCAGCTCGGCGGCATACACCAGCCAGtt > 6:128572/1‑120 (MQ=255) tCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGAc < 6:251529/149‑1 (MQ=255) cGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTtc < 6:197475/149‑1 (MQ=255) gTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACCCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAgg > 4:300119/1‑149 (MQ=255) gTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACCCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAgg > 4:295285/1‑149 (MQ=255) gTTGCTCGAAGATCAGCATGTTGCGGTAGTCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGACAGTTTCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAgg < 5:55932/149‑1 (MQ=255) ttGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAggg > 6:247892/1‑149 (MQ=255) agcagcagGTTGCGGTAGGCGCGCTCGTCACGGCGGAACCCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTc < 3:300119/149‑1 (MQ=255) agcagcagGTTGCGGTAGGCGCGCTCGTCACGGCGGAACCCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTc < 3:295285/149‑1 (MQ=255) agcagGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTc < 4:27537/149‑1 (MQ=255) gcagGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCGGACCAGATCGAGGCCGACGTTCATCAGGGACAGCTCGTCCTc > 6:293482/1‑148 (MQ=255) ggTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATg < 3:258724/149‑1 (MQ=255) ggCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCAc < 5:293482/149‑1 (MQ=255) ggCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCAc < 5:247892/149‑1 (MQ=255) gcgcgcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACg > 3:13244/1‑149 (MQ=255) cgcgcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCCGCTCTTCCTCGATCGCCGGGGCACgg > 8:243434/1‑149 (MQ=255) gcgcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCg < 6:246731/91‑1 (MQ=255) gcgcTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCg > 5:246731/1‑91 (MQ=255) aCGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCAtt > 8:134175/1‑149 (MQ=255) gcggAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGc < 2:94302/149‑1 (MQ=255) | CATCGCTGGACTCGACCAACCCCTGCAGCACGGCGAAGTGCCACGCGTCGTAGAGGAACTGCTTGGTCATGGTCACGGCAAAATCACCGTTGGGTTGCTCGACCAGCAGCAGGTTGCGGTAGGCGCGCTCGTCACGGCGGAACGCCAGGGCATCGGCATCTCGGCCATCGTCGAGCAGCTCGGCGGCATACTCCAGCCAGTTGCGGGCCTGGCCGACCAGATCGAGGCCGACGTTCATCAGGGCCAGCTCTTCCTCGATGGCCGGGGCACGGCCACACCATTCGC > NC_002947/3711333‑3711617 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |