Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,754,839 | G→A | 6.8% | A94T (GCA→ACA) | PP_3319 → | GGDEF domain‑containing sensory box protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,754,839 | 0 | G | A | 6.8% | 169.0 / 2.1 | 59 | A94T (GCA→ACA) | PP_3319 | GGDEF domain‑containing sensory box protein |
Reads supporting (aligned to +/- strand): ref base G (25/29); new base A (2/2); total (27/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.60e-01 |
GCACACTGTGTTCGATACTGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGA > NC_002947/3754699‑3754980 | gCACACTGTGTTCGATACTGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAAGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTccgc > 1:262410/1‑149 (MQ=255) acacTGTGTTCGATACTGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCACCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTccgccg > 4:86654/1‑149 (MQ=255) cacTGTGTTCGATACTGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCcgccgc < 8:280507/149‑1 (MQ=255) ttCGATACTGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCtgg < 7:274186/149‑1 (MQ=255) gATACTGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTTAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCtggtgg > 8:163863/1‑149 (MQ=255) tGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTACATTCcgccgc < 5:216001/134‑1 (MQ=255) tGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTACATTCcgccgc > 6:216001/1‑134 (MQ=255) aCCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGa > 3:176354/1‑149 (MQ=255) cGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTACATTCCGCCGCGAGCTGGTGGTGACAGCGGa < 4:189670/147‑1 (MQ=255) cGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTACATTCCGCCGCGAGCTGGTGGTGACAGCGGa > 3:189670/1‑147 (MQ=255) gcaaggcaagCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTTAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGccc < 7:163863/149‑1 (MQ=255) caaggcaagCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCg < 6:144662/149‑1 (MQ=255) aagCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATcc > 8:55751/1‑149 (MQ=255) cTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGGCAGCGGATATAGCCCGGGATCCGAGCTggg < 8:306557/148‑1 (MQ=255) cTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTggg < 6:190699/148‑1 (MQ=255) gAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAATGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGc > 6:243510/1‑149 (MQ=255) gggCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGtt < 4:299365/149‑1 (MQ=255) gcgccgcgccTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGtttt < 4:1762/149‑1 (MQ=255) cgccgcgccTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTc < 7:54737/149‑1 (MQ=255) cgccgcgccTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTc < 7:55751/149‑1 (MQ=255) cctggcctgCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCt > 5:159814/1‑149 (MQ=255) ctggcctgCCGCCTGCCTACAGCGATGCAATCCATGGGTTGCCCATCGGGCCTGAGGAAGGTACGTGTGGCAGAGCTGCATTGCGCCGCGAGCTGGTGGTGTCAGCGGat < 7:242437/110‑1 (MQ=255) tggcctgCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTgg > 2:142329/1‑149 (MQ=255) ggcctgCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGgc < 6:34768/149‑1 (MQ=255) ctgccgcctgccTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCAGGGAGCGTTTTCGCAGTCTGgcgc > 3:272057/1‑148 (MQ=255) ccgcctgccTACAGGGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTa < 6:159814/147‑1 (MQ=255) cctACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAATGTACGTGTGGCACAGCTGCATTCGTCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACaa < 5:243510/148‑1 (MQ=255) tACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATc > 2:318680/1‑148 (MQ=255) cAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCt < 3:86654/147‑1 (MQ=255) cGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCt > 1:339381/1‑149 (MQ=255) tGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGa < 6:168209/108‑1 (MQ=255) tGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGa > 5:168209/1‑108 (MQ=255) aTCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCctgc < 1:7469/147‑1 (MQ=255) aTCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCctgc > 2:7469/1‑147 (MQ=255) cATGGCTTGCCGATCGGGCCTCAGGAAGTTACGTGTGGCACAGCTGCATTCCGCCTCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTc < 1:113490/149‑1 (MQ=255) cATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGAAAGCGTATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTc < 5:245246/149‑1 (MQ=255) tGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGt < 2:262410/149‑1 (MQ=255) gCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGtt < 1:142329/148‑1 (MQ=255) cTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGc > 3:15652/1‑149 (MQ=255) ttGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGc > 4:302595/1‑148 (MQ=255) cATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGtt < 5:72496/141‑1 (MQ=255) cATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGtt > 6:72496/1‑141 (MQ=255) aTCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCctgc < 4:33992/132‑1 (MQ=255) aTCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCctgc > 3:33992/1‑132 (MQ=255) tCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTActc > 5:110066/1‑149 (MQ=255) gCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCg > 8:214624/1‑148 (MQ=255) aGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAg < 2:339381/149‑1 (MQ=255) gAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCt < 8:231389/115‑1 (MQ=255) gAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCt > 7:231389/1‑115 (MQ=255) gAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAggg > 5:187217/1‑149 (MQ=255) gAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAggg > 8:210028/1‑149 (MQ=255) ggTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTc < 4:176354/149‑1 (MQ=255) gTACGTGTGGCACAGCTGCATTCCGCCGCTAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCt < 6:185740/106‑1 (MQ=255) tACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCg > 2:218719/1‑149 (MQ=255) tgGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCtt < 6:110066/148‑1 (MQ=255) tgGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCtt < 4:15652/148‑1 (MQ=255) gCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTgg > 3:36357/1‑148 (MQ=255) cacaTCTTCATTCCGCCGCTATCTGGTGGTGACAGCGGATATATCCCGGGTTCCGAGCTGGGAGCGTTTTCTCTGTCTGGCGCTAGGGTATAATCTACGCTCCTTCTGGTCGTTGCCATTACTTTAGCATGAGGGCTCCGTTCTTggg < 7:214624/148‑1 (MQ=255) acaGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGa > 1:19930/1‑148 (MQ=255) | GCACACTGTGTTCGATACTGCTCACCGATGCGCAAGGCAAGCATTTGCTGAAGGGCGCCGCGCCTGGCCTGCCGCCTGCCTACAGCGATGCAATCCATGGCTTGCCCATCGGGCCTCAGGAAGGTACGTGTGGCACAGCTGCATTCCGCCGCGAGCTGGTGGTGACAGCGGATATAGCCCGGGATCCGAGCTGGGAGCGTTTTCGCAGTCTGGCGCTAGGGTACAATCTACGCTCCTGCTGGTCGTTGCCATTACTCTCGCATGAGGGCTCCGTTCTTGGGA > NC_002947/3754699‑3754980 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |