Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,788,632 C→G 100% M1M (ATG→ATC) † PP_3350 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,788,6320CG100.0% 152.5 / NA 45M1M (ATG→ATC) †PP_3350hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (23/22);  total (23/22)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAATGATCAGCATCAAG  >  NC_002947/3788488‑3788762
                                                                                                                                                |                                                                                                                                   
gtcgtcGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGAtgatca                                                                                                                                 <  3:56838/149‑1 (MQ=255)
   gtcgAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGaa                                                                                                                              >  8:269650/1‑149 (MQ=255)
           aggggTAGTCCTCGAGCGAGCGAGGGGCCCCTGGCCTCCGCGGCGGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGGGAAAGGACGTTGTGGGGCAGGCTTACCCCGTTCTACGGCTTGATGATCTGAATTTCGCtt                                                                                                                      <  6:145191/146‑1 (MQ=255)
           aGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCtt                                                                                                                      <  6:306736/149‑1 (MQ=255)
           aGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCtt                                                                                                                      <  7:269650/149‑1 (MQ=255)
                     cTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTcc                                                                                                                         <  1:187110/136‑1 (MQ=255)
                     cTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTcc                                                                                                                         >  2:187110/1‑136 (MQ=255)
                     cTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGtttt                                                                                                            >  1:167639/1‑149 (MQ=255)
                          tCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATaa                                                                                                       <  2:167639/149‑1 (MQ=255)
                             aGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTg                                                                                                   >  4:27775/1‑149 (MQ=255)
                              gCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGt                                                                                                  >  1:323888/1‑149 (MQ=255)
                                 aGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCt                                                                                               <  1:290027/149‑1 (MQ=255)
                                   gggCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCtt                                                                                              >  8:263551/1‑148 (MQ=255)
                                   gggCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTa                                                                                             <  3:258411/149‑1 (MQ=255)
                                   gggCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGACTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCtt                                                                                              >  6:335345/1‑148 (MQ=255)
                                      ccccTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACAATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGCATTTCCCTTCACTTGTTTTTATAA‑TTGGTCTTACa                                                                                           >  1:215758/1‑148 (MQ=255)
                                         cTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGTATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACt                                                                                       <  4:315704/149‑1 (MQ=255)
                                             ccTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGa                                                                                    >  7:131806/1‑148 (MQ=255)
                                                 cccGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGAt                                                                                   >  6:133327/1‑145 (MQ=255)
                                                 cccGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGAt                                                                                   <  5:133327/145‑1 (MQ=255)
                                                 cccGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAAct                                                                               >  3:25502/1‑149 (MQ=255)
                                                             tctTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGat                                                                    >  5:183850/1‑148 (MQ=255)
                                                                   aGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTAttttt                                                             <  7:263551/149‑1 (MQ=255)
                                                                   aGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTAttttt                                                             <  3:27775/149‑1 (MQ=255)
                                                                            gCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAAcc                                                      <  4:71115/147‑1 (MQ=255)
                                                                             ccGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAACTTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCat                                                    <  1:258442/149‑1 (MQ=255)
                                                                               gcgTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATg                                                 >  6:41605/1‑149 (MQ=255)
                                                                                    ggCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCg                                            <  8:131806/149‑1 (MQ=255)
                                                                                     gCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGt                                           >  5:25701/1‑149 (MQ=255)
                                                                                      cGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGt                                           >  6:325710/1‑148 (MQ=255)
                                                                                          aTGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATa                                      <  5:41605/149‑1 (MQ=255)
                                                                                          aTGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATa                                      <  3:105549/149‑1 (MQ=255)
                                                                                                caGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGttt                                <  2:323888/149‑1 (MQ=255)
                                                                                                       aGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCgtg                         >  8:318714/1‑149 (MQ=255)
                                                                                                              tGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAAc                                                                                <  2:338336/87‑1 (MQ=255)
                                                                                                              tGAGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAAc                                                                                >  1:338336/1‑87 (MQ=255)
                                                                                                                aGGGGCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGaa                <  6:183850/149‑1 (MQ=255)
                                                                                                                 ggggCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAAt               >  6:318220/1‑149 (MQ=255)
                                                                                                                  gggCAGGCATACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAAt               >  1:332076/1‑148 (MQ=255)
                                                                                                                    gcaggcaTACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATgcgc                                              <  2:184571/115‑1 (MQ=255)
                                                                                                                    gcaggcaTACCCCGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATgcgc                                              >  1:184571/1‑115 (MQ=255)
                                                                                                                             ccccGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAATGATCAGCATCaa   <  6:25701/149‑1 (MQ=255)
                                                                                                                              cccGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGa                 <  4:121388/134‑1 (MQ=255)
                                                                                                                              cccGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGa                 >  3:121388/1‑134 (MQ=255)
                                                                                                                              cccGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAATGATCAGCATCAAg  >  6:46966/1‑149 (MQ=255)
                                                                                                                              cccGTTCAACGGCTTGATGATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAATGATCAGCATCAAg  >  8:109446/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                   
GTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAA‑TTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTGTACAAGGAATGATCAGCATCAAG  >  NC_002947/3788488‑3788762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑