Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,793,801 | C→G | 8.5% | G241A (GGT→GCT) ‡ | PP_3355 ← | beta‑ketothiolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,793,801 | 0 | C | G | 8.5% | 180.7 / 7.2 | 59 | G241A (GGT→GCT) ‡ | PP_3355 | beta‑ketothiolase |
Reads supporting (aligned to +/- strand): ref base C (27/27); new base G (3/2); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01 |
CCCATGAGGCCGGGCGGCACGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGAC > NC_002947/3793657‑3793949 | cccATGAGGCCGGGCGGCACGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGc < 4:86418/149‑1 (MQ=255) ccATGAGGCCGGGCGGCACGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCg > 5:337947/1‑149 (MQ=255) ccATGAGGCCGGGCGGCACGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCg > 7:23375/1‑149 (MQ=255) gCCGGGCGGCACGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCGGTGGCGTGCagac > 6:89103/1‑146 (MQ=255) gCCGGGCGGCACGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCg > 1:199738/1‑149 (MQ=255) ccGGGCGGCACGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCGGTGGCGTGCagacg < 5:89103/149‑5 (MQ=255) cGCCAACAGCCGTGTCCATCATCAAGCGGGCCAAAGGCTGATGAGTGCAATGGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCTTCGACCACCGCGCAACTGTTGCCAGCGGTATGCACGCCACCGGCGTGAAGCGGGCGCAGTCgg < 8:278006/149‑1 (MQ=255) cGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCgg < 5:81109/149‑1 (MQ=255) ccAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGc < 4:247718/149‑1 (MQ=255) catcAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGc > 4:204944/4‑148 (MQ=255) gTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCa > 3:267981/1‑133 (MQ=255) gTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCa < 4:267981/133‑1 (MQ=255) gCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCcgc > 5:226512/1‑149 (MQ=255) cATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGt > 5:302839/1‑149 (MQ=255) aTCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTc < 4:204120/149‑1 (MQ=255) aGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGt < 8:23375/149‑1 (MQ=255) aGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGc < 6:226512/149‑1 (MQ=255) gcgcCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCgt < 3:204944/149‑1 (MQ=255) gcCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCgtgg < 4:275731/149‑1 (MQ=255) cAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCgtgggt > 4:306232/1‑149 (MQ=255) aaaGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCgtgggtg > 1:27729/1‑149 (MQ=255) ggATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTc > 4:229383/1‑149 (MQ=255) gTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCGGTGGCGTGCaga > 2:5573/1‑91 (MQ=255) gTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCGGTGGCGTGCaga < 1:5573/93‑3 (MQ=255) tGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCt > 6:308582/1‑148 (MQ=255) tGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCt > 6:324699/1‑148 (MQ=255) tGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTg > 8:323620/1‑149 (MQ=255) cAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGa < 3:229383/148‑1 (MQ=255) cAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGAc < 2:27729/149‑1 (MQ=255) tCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACctc < 7:323620/149‑1 (MQ=255) gcgTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGGTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTcacgcca > 1:70859/1‑149 (MQ=255) gTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTcacgccacg < 2:199738/149‑1 (MQ=255) gccgccGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGgcaatgcaat > 5:102568/1‑149 (MQ=255) gccgcGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGcc > 6:161180/1‑149 (MQ=255) gccgcGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGcc < 5:161180/149‑1 (MQ=255) cgcCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGt > 6:47099/1‑149 (MQ=255) cgcCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGt < 5:308582/149‑1 (MQ=255) gcCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCATTGCATTGCCGCGtg < 6:337947/149‑1 (MQ=255) gcCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGtg < 2:71869/149‑1 (MQ=255) cGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTcc > 2:200512/1‑101 (MQ=255) cGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTcc < 1:200512/101‑1 (MQ=255) accGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGcc > 5:58923/1‑149 (MQ=255) ccGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCTGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGgcaatgca < 1:276348/128‑1 (MQ=255) ccGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGgcaatgca > 2:276348/1‑128 (MQ=255) ccGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCt < 3:306232/149‑1 (MQ=255) ccGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCt < 2:91886/149‑1 (MQ=255) cgcgCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCtt > 7:99872/1‑149 (MQ=255) cgcgCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCt > 6:301545/1‑148 (MQ=255) cAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGt < 2:329715/67‑1 (MQ=255) cAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGt > 1:329715/1‑67 (MQ=255) ttGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTcc < 5:301545/147‑1 (MQ=255) ttGCCAGCCGTCTGCACGCCACCAGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAg > 3:182508/1‑149 (MQ=255) cccggtGCACGCCGGTGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTgc > 3:81987/6‑149 (MQ=255) cACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGgcaat > 6:154345/1‑100 (MQ=255) cACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGgcaat < 5:154345/100‑1 (MQ=255) cACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGt < 2:70859/147‑1 (MQ=255) gCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTgcgc < 2:331689/141‑1 (MQ=255) gCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTgcgc > 1:331689/1‑141 (MQ=255) gCCACCGGCGAGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGCGAGGCCGTGGGTCGCTGTCCTCGCGGACCTCACTCACGCCACGCGGCAATGCAAACCCGCGTGGCTGGCAGCCATCAACCTCCAGTGCCTCCGCGGtcaagc > 6:19093/1‑144 (MQ=255) ccGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGAc < 6:102568/149‑1 (MQ=255) | CCCATGAGGCCGGGCGGCACGCCAACAGCCGTGGCCATCAGCAAGCGCGCCAAAGGCGGATGAGTGCAATCGGAGTAGCGCGTGACCAAGGCTGCCGCCGCGCCATCGACCACCGCGCAACTGTTGCCAGCCGTCTGCACGCCACCGGCGTGCACCGGGCGCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGAC > NC_002947/3793657‑3793949 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |